HCSGD entry for PDLIM4

1. General information

Official gene symbolPDLIM4
Entrez ID8572
Gene full namePDZ and LIM domain 4
Other gene symbolsRIL
Links to Entrez GeneLinks to Entrez Gene

2. Neighbors in the network

color bar
This gene isn't in PPI subnetwork.

3. Gene ontology annotation

GO ID

GO term

Evidence

Category

GO:0005515Protein bindingIPImolecular_function
GO:0008270Zinc ion bindingIEAmolecular_function
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4. Expression levels in datasets

  • Meta-analysis result

p-value upp-value downFDR upFDR down
0.00212518520.95496220510.12352511011.0000000000

  • Individual experiment result
    ( "-" represent NA in the specific microarray platform )

Data sourceUp or downLog fold change
GSE11954Up0.2172327685
GSE13712_SHEARUp0.3390367488
GSE13712_STATICUp0.3939634314
GSE19018Down-0.5461132559
GSE19899_A1Up0.9697011159
GSE19899_A2Up1.4128285333
PubMed_21979375_A1Up2.7281710117
PubMed_21979375_A2Up1.5051934302
GSE35957Up0.3319845787
GSE36640Up0.5019706061
GSE54402Up1.0310225049
GSE9593Down-0.3049113090
GSE43922Up0.9016301461
GSE24585Up0.1184428108
GSE37065Up0.1593223462
GSE28863_A1Down-0.1572979707
GSE28863_A2Up0.0747269775
GSE28863_A3Up0.0074376186
GSE28863_A4Down-0.1842539628
GSE48662Up0.7172145525

5. Regulation relationships with compounds/drugs/microRNAs

  • Compounds

Not regulated by compounds

  • Drugs

Not regulated by drugs

  • MicroRNAs

    • mirTarBase

MiRNA_name

mirBase ID

miRTarBase ID

Experiment

Support type

References (Pubmed ID)

hsa-miR-335-5pMIMAT0000765MIRT018921MicroarrayFunctional MTI (Weak)18185580
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    • mirRecord
No target information from mirRecord

6. Text-mining results about the gene

Gene occurances in abstracts of cellular senescence-associated articles: This gene isn't in text-mining gene-sentence result.