HCSGD entry for PDLIM4
1. General information
| Official gene symbol | PDLIM4 |
|---|---|
| Entrez ID | 8572 |
| Gene full name | PDZ and LIM domain 4 |
| Other gene symbols | RIL |
| Links to Entrez Gene | Links to Entrez Gene |
2. Neighbors in the network
This gene isn't in Literature mining network.
3. Gene ontology annotation
GO ID | GO term | Evidence | Category |
|---|---|---|---|
| GO:0005515 | Protein binding | IPI | molecular_function |
| GO:0008270 | Zinc ion binding | IEA | molecular_function |
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4. Expression levels in datasets
- Meta-analysis result
| p-value up | p-value down | FDR up | FDR down |
|---|---|---|---|
| 0.0021251852 | 0.9549622051 | 0.1235251101 | 1.0000000000 |
- Individual experiment result
( "-" represent NA in the specific microarray platform )
( "-" represent NA in the specific microarray platform )
| Data source | Up or down | Log fold change |
|---|---|---|
| GSE11954 | Up | 0.2172327685 |
| GSE13712_SHEAR | Up | 0.3390367488 |
| GSE13712_STATIC | Up | 0.3939634314 |
| GSE19018 | Down | -0.5461132559 |
| GSE19899_A1 | Up | 0.9697011159 |
| GSE19899_A2 | Up | 1.4128285333 |
| PubMed_21979375_A1 | Up | 2.7281710117 |
| PubMed_21979375_A2 | Up | 1.5051934302 |
| GSE35957 | Up | 0.3319845787 |
| GSE36640 | Up | 0.5019706061 |
| GSE54402 | Up | 1.0310225049 |
| GSE9593 | Down | -0.3049113090 |
| GSE43922 | Up | 0.9016301461 |
| GSE24585 | Up | 0.1184428108 |
| GSE37065 | Up | 0.1593223462 |
| GSE28863_A1 | Down | -0.1572979707 |
| GSE28863_A2 | Up | 0.0747269775 |
| GSE28863_A3 | Up | 0.0074376186 |
| GSE28863_A4 | Down | -0.1842539628 |
| GSE48662 | Up | 0.7172145525 |
5. Regulation relationships with compounds/drugs/microRNAs
- Compounds
Not regulated by compounds
- Drugs
Not regulated by drugs
- MicroRNAs
- mirTarBase
MiRNA_name | mirBase ID | miRTarBase ID | Experiment | Support type | References (Pubmed ID) |
|---|---|---|---|---|---|
| hsa-miR-335-5p | MIMAT0000765 | MIRT018921 | Microarray | Functional MTI (Weak) | 18185580 |
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- mirRecord
No target information from mirRecord
6. Text-mining results about the gene
Gene occurances in abstracts of cellular senescence-associated articles: This gene isn't in text-mining gene-sentence result.
