HCSGD entry for TRIM7
1. General information
| Official gene symbol | TRIM7 |
|---|---|
| Entrez ID | 81786 |
| Gene full name | tripartite motif containing 7 |
| Other gene symbols | GNIP RNF90 |
| Links to Entrez Gene | Links to Entrez Gene |
2. Neighbors in the network
This gene isn't in PPI subnetwork.
3. Gene ontology annotation
GO ID | GO term | Evidence | Category |
|---|---|---|---|
| GO:0005634 | Nucleus | IDA | cellular_component |
| GO:0005730 | Nucleolus | IDA | cellular_component |
| GO:0005737 | Cytoplasm | IDA | cellular_component |
| GO:0008270 | Zinc ion binding | IEA | molecular_function |
| GO:0043231 | Intracellular membrane-bounded organelle | IDA | cellular_component |
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4. Expression levels in datasets
- Meta-analysis result
| p-value up | p-value down | FDR up | FDR down |
|---|---|---|---|
| 0.9392908362 | 0.2524270620 | 0.9999902473 | 0.9644553201 |
- Individual experiment result
( "-" represent NA in the specific microarray platform )
( "-" represent NA in the specific microarray platform )
| Data source | Up or down | Log fold change |
|---|---|---|
| GSE11954 | Down | -0.0347705045 |
| GSE13712_SHEAR | Down | -0.3512785617 |
| GSE13712_STATIC | Down | -0.2164180749 |
| GSE19018 | Up | 0.1678081758 |
| GSE19899_A1 | Down | -0.0140832675 |
| GSE19899_A2 | Down | -0.1295903403 |
| PubMed_21979375_A1 | Down | -0.3053204176 |
| PubMed_21979375_A2 | Down | -0.1910528063 |
| GSE35957 | Down | -0.0190955446 |
| GSE36640 | Down | -0.4534430211 |
| GSE54402 | Down | -0.0774206295 |
| GSE9593 | Down | -0.0742689185 |
| GSE43922 | Up | 0.0148866404 |
| GSE24585 | Up | 0.0843738154 |
| GSE37065 | Up | 0.0140646991 |
| GSE28863_A1 | Up | 0.0015789803 |
| GSE28863_A2 | Up | 0.1476191058 |
| GSE28863_A3 | Up | 0.0620353519 |
| GSE28863_A4 | Up | 0.0710098117 |
| GSE48662 | Down | -0.3950873595 |
5. Regulation relationships with compounds/drugs/microRNAs
- Compounds
Not regulated by compounds
- Drugs
Not regulated by drugs
- MicroRNAs
- mirTarBase
- mirTarBase
MiRNA_name | mirBase ID | miRTarBase ID | Experiment | Support type | References (Pubmed ID) |
|---|---|---|---|---|---|
| hsa-miR-124-3p | MIMAT0000422 | MIRT022939 | Microarray | Functional MTI (Weak) | 18668037 |
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- mirRecord
No target information from mirRecord
- mirRecord
6. Text-mining results about the gene
Gene occurances in abstracts of cellular senescence-associated articles: This gene isn't in text-mining gene-sentence result.
