HCSGD entry for CLRN1

1. General information

Official gene symbolCLRN1
Entrez ID7401
Gene full nameclarin 1
Other gene symbolsRP61 USH3 USH3A
Links to Entrez GeneLinks to Entrez Gene

2. Neighbors in the network

color bar
This gene isn't in PPI subnetwork.

3. Gene ontology annotation

GO ID

GO term

Evidence

Category

GO:0005886Plasma membraneIDAcellular_component
GO:0005902MicrovillusIDAcellular_component
GO:0007015Actin filament organizationIDAbiological_process
GO:0007601Visual perceptionIEAbiological_process
GO:0007605Sensory perception of soundIMPbiological_process
GO:0010592Positive regulation of lamellipodium assemblyIDAbiological_process
GO:0016021Integral component of membraneIEAcellular_component
GO:0030027LamellipodiumIDAcellular_component
GO:0045494Photoreceptor cell maintenanceIMPbiological_process
GO:0048870Cell motilityIDAbiological_process
GO:0050896Response to stimulusIEAbiological_process
GO:0050953Sensory perception of light stimulusIMPbiological_process
GO:0050957EquilibrioceptionIMPbiological_process
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4. Expression levels in datasets

  • Meta-analysis result

p-value upp-value downFDR upFDR down
0.37811427000.97205703050.99999024731.0000000000

  • Individual experiment result
    ( "-" represent NA in the specific microarray platform )

Data sourceUp or downLog fold change
GSE11954Up0.1115215933
GSE13712_SHEARUp0.0438732985
GSE13712_STATICUp0.0521580295
GSE19018Up0.0095816395
GSE19899_A1Up0.1435507255
GSE19899_A2Up0.2670719897
PubMed_21979375_A1Up0.0339559990
PubMed_21979375_A2Up0.1614614333
GSE35957Up0.0579128881
GSE36640Up0.0086220624
GSE54402Up0.0423557621
GSE9593Down-0.0260670150
GSE43922Up0.0185946462
GSE24585Up0.2899400432
GSE37065Down-0.0288487926
GSE28863_A1Up0.1534820656
GSE28863_A2Up0.2288043343
GSE28863_A3Up0.0167844073
GSE28863_A4Up0.0108309872
GSE48662Up0.0592643692

5. Regulation relationships with compounds/drugs/microRNAs

  • Compounds

Not regulated by compounds

  • Drugs

Not regulated by drugs

  • MicroRNAs

    • mirTarBase
No target information from mirTarBase
    • mirRecord
No target information from mirRecord

6. Text-mining results about the gene

Gene occurances in abstracts of cellular senescence-associated articles: This gene isn't in text-mining gene-sentence result.