HCSGD entry for CLRN1
1. General information
| Official gene symbol | CLRN1 |
|---|---|
| Entrez ID | 7401 |
| Gene full name | clarin 1 |
| Other gene symbols | RP61 USH3 USH3A |
| Links to Entrez Gene | Links to Entrez Gene |
2. Neighbors in the network
This gene isn't in Literature mining network.
3. Gene ontology annotation
GO ID | GO term | Evidence | Category |
|---|---|---|---|
| GO:0005886 | Plasma membrane | IDA | cellular_component |
| GO:0005902 | Microvillus | IDA | cellular_component |
| GO:0007015 | Actin filament organization | IDA | biological_process |
| GO:0007601 | Visual perception | IEA | biological_process |
| GO:0007605 | Sensory perception of sound | IMP | biological_process |
| GO:0010592 | Positive regulation of lamellipodium assembly | IDA | biological_process |
| GO:0016021 | Integral component of membrane | IEA | cellular_component |
| GO:0030027 | Lamellipodium | IDA | cellular_component |
| GO:0045494 | Photoreceptor cell maintenance | IMP | biological_process |
| GO:0048870 | Cell motility | IDA | biological_process |
| GO:0050896 | Response to stimulus | IEA | biological_process |
| GO:0050953 | Sensory perception of light stimulus | IMP | biological_process |
| GO:0050957 | Equilibrioception | IMP | biological_process |
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4. Expression levels in datasets
- Meta-analysis result
| p-value up | p-value down | FDR up | FDR down |
|---|---|---|---|
| 0.3781142700 | 0.9720570305 | 0.9999902473 | 1.0000000000 |
- Individual experiment result
( "-" represent NA in the specific microarray platform )
( "-" represent NA in the specific microarray platform )
| Data source | Up or down | Log fold change |
|---|---|---|
| GSE11954 | Up | 0.1115215933 |
| GSE13712_SHEAR | Up | 0.0438732985 |
| GSE13712_STATIC | Up | 0.0521580295 |
| GSE19018 | Up | 0.0095816395 |
| GSE19899_A1 | Up | 0.1435507255 |
| GSE19899_A2 | Up | 0.2670719897 |
| PubMed_21979375_A1 | Up | 0.0339559990 |
| PubMed_21979375_A2 | Up | 0.1614614333 |
| GSE35957 | Up | 0.0579128881 |
| GSE36640 | Up | 0.0086220624 |
| GSE54402 | Up | 0.0423557621 |
| GSE9593 | Down | -0.0260670150 |
| GSE43922 | Up | 0.0185946462 |
| GSE24585 | Up | 0.2899400432 |
| GSE37065 | Down | -0.0288487926 |
| GSE28863_A1 | Up | 0.1534820656 |
| GSE28863_A2 | Up | 0.2288043343 |
| GSE28863_A3 | Up | 0.0167844073 |
| GSE28863_A4 | Up | 0.0108309872 |
| GSE48662 | Up | 0.0592643692 |
5. Regulation relationships with compounds/drugs/microRNAs
- Compounds
Not regulated by compounds
- Drugs
Not regulated by drugs
- MicroRNAs
- mirTarBase
No target information from mirTarBase
- mirRecord
No target information from mirRecord
6. Text-mining results about the gene
Gene occurances in abstracts of cellular senescence-associated articles: This gene isn't in text-mining gene-sentence result.
