HCSGD entry for TULP3

1. General information

Official gene symbolTULP3
Entrez ID7289
Gene full nametubby like protein 3
Other gene symbolsTUBL3
Links to Entrez GeneLinks to Entrez Gene

2. Neighbors in the network

color bar
This gene isn't in PPI subnetwork.

3. Gene ontology annotation

GO ID

GO term

Evidence

Category

GO:0001701In utero embryonic developmentIEAbiological_process
GO:0001843Neural tube closureIEAbiological_process
GO:0005515Protein bindingIPImolecular_function
GO:0005546Phosphatidylinositol-4,5-bisphosphate bindingNASmolecular_function
GO:0005576Extracellular regionIEAcellular_component
GO:0005634NucleusIDA NAScellular_component
GO:0005737CytoplasmIEAcellular_component
GO:0005886Plasma membraneNAScellular_component
GO:0006355Regulation of transcription, DNA-templatedNASbiological_process
GO:0007186G-protein coupled receptor signaling pathwayNASbiological_process
GO:0007275Multicellular organismal developmentIEAbiological_process
GO:0007420Brain developmentIEAbiological_process
GO:0008277Regulation of G-protein coupled receptor protein signaling pathwayIDAbiological_process
GO:0021914Negative regulation of smoothened signaling pathway involved in ventral spinal cord patterningIEAbiological_process
GO:0021953Central nervous system neuron differentiationIEAbiological_process
GO:0030991Intraciliary transport particle AIDAcellular_component
GO:0031076Embryonic camera-type eye developmentIEAbiological_process
GO:0035091Phosphatidylinositol bindingIDAmolecular_function
GO:0042733Embryonic digit morphogenesisIEAbiological_process
GO:0045879Negative regulation of smoothened signaling pathwayIDAbiological_process
GO:0048702Embryonic neurocranium morphogenesisIEAbiological_process
GO:0060434Bronchus morphogenesisIEAbiological_process
GO:0060831Smoothened signaling pathway involved in dorsal/ventral neural tube patterningIEAbiological_process
GO:0072372Primary ciliumIDA IEAcellular_component
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4. Expression levels in datasets

  • Meta-analysis result

p-value upp-value downFDR upFDR down
0.82431351390.03848472320.99999024730.3692877871

  • Individual experiment result
    ( "-" represent NA in the specific microarray platform )

Data sourceUp or downLog fold change
GSE11954Down-0.0955131612
GSE13712_SHEARDown-0.2609363657
GSE13712_STATICUp0.1266085762
GSE19018Up0.6157023579
GSE19899_A1Down-0.3129609874
GSE19899_A2Down-0.3521675566
PubMed_21979375_A1Down-0.3750324404
PubMed_21979375_A2Down-0.1402672575
GSE35957Down-0.6022277304
GSE36640Down-0.0936054991
GSE54402Up0.2767877462
GSE9593Up0.2987932138
GSE43922Down-0.2123714326
GSE24585Up0.3960585167
GSE37065Down-0.0631008402
GSE28863_A1Down-0.5286379623
GSE28863_A2Down-0.7868662265
GSE28863_A3Down-0.4432261295
GSE28863_A4Down-0.1339885420
GSE48662Up0.0183467799

5. Regulation relationships with compounds/drugs/microRNAs

  • Compounds

Not regulated by compounds

  • Drugs

Not regulated by drugs

  • MicroRNAs

    • mirTarBase

MiRNA_name

mirBase ID

miRTarBase ID

Experiment

Support type

References (Pubmed ID)

hsa-miR-335-5pMIMAT0000765MIRT017823MicroarrayFunctional MTI (Weak)18185580
hsa-miR-93-3pMIMAT0004509MIRT038740CLASHFunctional MTI (Weak)23622248
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    • mirRecord
No target information from mirRecord

6. Text-mining results about the gene

Gene occurances in abstracts of cellular senescence-associated articles: This gene isn't in text-mining gene-sentence result.