HCSGD entry for TULP3

1. General information

Official gene symbolTULP3
Entrez ID7289
Gene full nametubby like protein 3
Other gene symbolsTUBL3
Links to Entrez GeneLinks to Entrez Gene

2. Neighbors in the network

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This gene isn't in Literature mining network.

3. Gene ontology annotation

GO ID

GO term

Evidence

Category

GO:0001701In utero embryonic developmentIEAbiological_process
GO:0001843Neural tube closureIEAbiological_process
GO:0005515Protein bindingIPImolecular_function
GO:0005546Phosphatidylinositol-4,5-bisphosphate bindingNASmolecular_function
GO:0005576Extracellular regionIEAcellular_component
GO:0005634NucleusIDA NAScellular_component
GO:0005737CytoplasmIEAcellular_component
GO:0005886Plasma membraneNAScellular_component
GO:0006355Regulation of transcription, DNA-templatedNASbiological_process
GO:0007186G-protein coupled receptor signaling pathwayNASbiological_process
GO:0007275Multicellular organismal developmentIEAbiological_process
GO:0007420Brain developmentIEAbiological_process
GO:0008277Regulation of G-protein coupled receptor protein signaling pathwayIDAbiological_process
GO:0021914Negative regulation of smoothened signaling pathway involved in ventral spinal cord patterningIEAbiological_process
GO:0021953Central nervous system neuron differentiationIEAbiological_process
GO:0030991Intraciliary transport particle AIDAcellular_component
GO:0031076Embryonic camera-type eye developmentIEAbiological_process
GO:0035091Phosphatidylinositol bindingIDAmolecular_function
GO:0042733Embryonic digit morphogenesisIEAbiological_process
GO:0045879Negative regulation of smoothened signaling pathwayIDAbiological_process
GO:0048702Embryonic neurocranium morphogenesisIEAbiological_process
GO:0060434Bronchus morphogenesisIEAbiological_process
GO:0060831Smoothened signaling pathway involved in dorsal/ventral neural tube patterningIEAbiological_process
GO:0072372Primary ciliumIDA IEAcellular_component
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4. Expression levels in datasets

  • Meta-analysis result

p-value upp-value downFDR upFDR down
0.82431351390.03848472320.99999024730.3692877871

  • Individual experiment result
    ( "-" represent NA in the specific microarray platform )

Data sourceUp or downLog fold change
GSE11954Down-0.0955131612
GSE13712_SHEARDown-0.2609363657
GSE13712_STATICUp0.1266085762
GSE19018Up0.6157023579
GSE19899_A1Down-0.3129609874
GSE19899_A2Down-0.3521675566
PubMed_21979375_A1Down-0.3750324404
PubMed_21979375_A2Down-0.1402672575
GSE35957Down-0.6022277304
GSE36640Down-0.0936054991
GSE54402Up0.2767877462
GSE9593Up0.2987932138
GSE43922Down-0.2123714326
GSE24585Up0.3960585167
GSE37065Down-0.0631008402
GSE28863_A1Down-0.5286379623
GSE28863_A2Down-0.7868662265
GSE28863_A3Down-0.4432261295
GSE28863_A4Down-0.1339885420
GSE48662Up0.0183467799

5. Regulation relationships with compounds/drugs/microRNAs

  • Compounds

Not regulated by compounds

  • Drugs

Not regulated by drugs

  • MicroRNAs

  • mirTarBase

MiRNA_name

mirBase ID

miRTarBase ID

Experiment

Support type

References (Pubmed ID)

hsa-miR-335-5pMIMAT0000765MIRT017823MicroarrayFunctional MTI (Weak)18185580
hsa-miR-93-3pMIMAT0004509MIRT038740CLASHFunctional MTI (Weak)23622248
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  • mirRecord
No target information from mirRecord

6. Text-mining results about the gene

Gene occurances in abstracts of cellular senescence-associated articles: This gene isn't in text-mining gene-sentence result.