HCSGD entry for RP1

1. General information

Official gene symbolRP1
Entrez ID6101
Gene full nameretinitis pigmentosa 1 (autosomal dominant)
Other gene symbolsDCDC4A ORP1
Links to Entrez GeneLinks to Entrez Gene

2. Neighbors in the network

color bar
This gene isn't in PPI subnetwork.

3. Gene ontology annotation

GO ID

GO term

Evidence

Category

GO:0001750Photoreceptor outer segmentISScellular_component
GO:0001917Photoreceptor inner segmentIDAcellular_component
GO:0005515Protein bindingIPImolecular_function
GO:0005874MicrotubuleIEAcellular_component
GO:0005875Microtubule associated complexISScellular_component
GO:0005930AxonemeIEAcellular_component
GO:0007601Visual perceptionIEAbiological_process
GO:0007603Phototransduction, visible lightTASbiological_process
GO:0008017Microtubule bindingISSmolecular_function
GO:0032391Photoreceptor connecting ciliumIDAcellular_component
GO:0035082Axoneme assemblyISSbiological_process
GO:0035556Intracellular signal transductionIEAbiological_process
GO:0035845Photoreceptor cell outer segment organizationISSbiological_process
GO:0042461Photoreceptor cell developmentISSbiological_process
GO:0045494Photoreceptor cell maintenanceISSbiological_process
GO:0046548Retinal rod cell developmentISSbiological_process
GO:0046549Retinal cone cell developmentISSbiological_process
GO:0071482Cellular response to light stimulusIEAbiological_process
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4. Expression levels in datasets

  • Meta-analysis result

p-value upp-value downFDR upFDR down
0.00436514950.73703034080.17602159261.0000000000

  • Individual experiment result
    ( "-" represent NA in the specific microarray platform )

Data sourceUp or downLog fold change
GSE11954Up0.0031236908
GSE13712_SHEARDown-0.1730063513
GSE13712_STATICDown-0.1215410199
GSE19018Down-0.1195541605
GSE19899_A1Up0.7885463920
GSE19899_A2Up4.1707462824
PubMed_21979375_A1Up3.3781289024
PubMed_21979375_A2Up4.5547009033
GSE35957Up0.1497528881
GSE36640Up0.0023591943
GSE54402Up0.4105054480
GSE9593Up0.0224922582
GSE43922Up1.9436283973
GSE24585Down-0.2803350378
GSE37065Down-0.0551014068
GSE28863_A1Down-0.3848160475
GSE28863_A2Down-0.3144418223
GSE28863_A3Up0.1494404346
GSE28863_A4Up0.1848443039
GSE48662Down-0.0130830618

5. Regulation relationships with compounds/drugs/microRNAs

  • Compounds

Not regulated by compounds

  • Drugs

Not regulated by drugs

  • MicroRNAs

    • mirTarBase

MiRNA_name

mirBase ID

miRTarBase ID

Experiment

Support type

References (Pubmed ID)

hsa-miR-335-5pMIMAT0000765MIRT018673MicroarrayFunctional MTI (Weak)18185580
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    • mirRecord
No target information from mirRecord

6. Text-mining results about the gene

Gene occurances in abstracts of cellular senescence-associated articles: This gene isn't in text-mining gene-sentence result.