HCSGD entry for RP1
1. General information
Official gene symbol | RP1 |
---|---|
Entrez ID | 6101 |
Gene full name | retinitis pigmentosa 1 (autosomal dominant) |
Other gene symbols | DCDC4A ORP1 |
Links to Entrez Gene | Links to Entrez Gene |
2. Neighbors in the network
This gene isn't in Literature mining network.
3. Gene ontology annotation
GO ID | GO term | Evidence | Category |
---|---|---|---|
GO:0001750 | Photoreceptor outer segment | ISS | cellular_component |
GO:0001917 | Photoreceptor inner segment | IDA | cellular_component |
GO:0005515 | Protein binding | IPI | molecular_function |
GO:0005874 | Microtubule | IEA | cellular_component |
GO:0005875 | Microtubule associated complex | ISS | cellular_component |
GO:0005930 | Axoneme | IEA | cellular_component |
GO:0007601 | Visual perception | IEA | biological_process |
GO:0007603 | Phototransduction, visible light | TAS | biological_process |
GO:0008017 | Microtubule binding | ISS | molecular_function |
GO:0032391 | Photoreceptor connecting cilium | IDA | cellular_component |
GO:0035082 | Axoneme assembly | ISS | biological_process |
GO:0035556 | Intracellular signal transduction | IEA | biological_process |
GO:0035845 | Photoreceptor cell outer segment organization | ISS | biological_process |
GO:0042461 | Photoreceptor cell development | ISS | biological_process |
GO:0045494 | Photoreceptor cell maintenance | ISS | biological_process |
GO:0046548 | Retinal rod cell development | ISS | biological_process |
GO:0046549 | Retinal cone cell development | ISS | biological_process |
GO:0071482 | Cellular response to light stimulus | IEA | biological_process |
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4. Expression levels in datasets
- Meta-analysis result
p-value up | p-value down | FDR up | FDR down |
---|---|---|---|
0.0043651495 | 0.7370303408 | 0.1760215926 | 1.0000000000 |
- Individual experiment result
( "-" represent NA in the specific microarray platform )
( "-" represent NA in the specific microarray platform )
Data source | Up or down | Log fold change |
---|---|---|
GSE11954 | Up | 0.0031236908 |
GSE13712_SHEAR | Down | -0.1730063513 |
GSE13712_STATIC | Down | -0.1215410199 |
GSE19018 | Down | -0.1195541605 |
GSE19899_A1 | Up | 0.7885463920 |
GSE19899_A2 | Up | 4.1707462824 |
PubMed_21979375_A1 | Up | 3.3781289024 |
PubMed_21979375_A2 | Up | 4.5547009033 |
GSE35957 | Up | 0.1497528881 |
GSE36640 | Up | 0.0023591943 |
GSE54402 | Up | 0.4105054480 |
GSE9593 | Up | 0.0224922582 |
GSE43922 | Up | 1.9436283973 |
GSE24585 | Down | -0.2803350378 |
GSE37065 | Down | -0.0551014068 |
GSE28863_A1 | Down | -0.3848160475 |
GSE28863_A2 | Down | -0.3144418223 |
GSE28863_A3 | Up | 0.1494404346 |
GSE28863_A4 | Up | 0.1848443039 |
GSE48662 | Down | -0.0130830618 |
5. Regulation relationships with compounds/drugs/microRNAs
- Compounds
Not regulated by compounds
- Drugs
Not regulated by drugs
- MicroRNAs
- mirTarBase
MiRNA_name | mirBase ID | miRTarBase ID | Experiment | Support type | References (Pubmed ID) |
---|---|---|---|---|---|
hsa-miR-335-5p | MIMAT0000765 | MIRT018673 | Microarray | Functional MTI (Weak) | 18185580 |
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