HCSGD entry for PCDHB16
1. General information
| Official gene symbol | PCDHB16 |
|---|---|
| Entrez ID | 57717 |
| Gene full name | protocadherin beta 16 |
| Other gene symbols | ME1 PCDH-BETA16 PCDH3X PCDHB8a |
| Links to Entrez Gene | Links to Entrez Gene |
2. Neighbors in the network
This gene isn't in PPI subnetwork.
3. Gene ontology annotation
GO ID | GO term | Evidence | Category |
|---|---|---|---|
| GO:0005509 | Calcium ion binding | IEA | molecular_function |
| GO:0005886 | Plasma membrane | IEA | cellular_component |
| GO:0007156 | Homophilic cell adhesion | IEA | biological_process |
| GO:0007268 | Synaptic transmission | TAS | biological_process |
| GO:0007416 | Synapse assembly | TAS | biological_process |
| GO:0016021 | Integral component of membrane | NAS | cellular_component |
| GO:0016339 | Calcium-dependent cell-cell adhesion | NAS | biological_process |
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4. Expression levels in datasets
- Meta-analysis result
| p-value up | p-value down | FDR up | FDR down |
|---|---|---|---|
| 0.0035643213 | 0.0382466814 | 0.1618317241 | 0.3682117410 |
- Individual experiment result
( "-" represent NA in the specific microarray platform )
( "-" represent NA in the specific microarray platform )
| Data source | Up or down | Log fold change |
|---|---|---|
| GSE11954 | Up | 0.3432127462 |
| GSE13712_SHEAR | Down | -0.2388890730 |
| GSE13712_STATIC | Up | 0.0839460162 |
| GSE19018 | Down | -0.6738778434 |
| GSE19899_A1 | Down | -0.2293715432 |
| GSE19899_A2 | Down | -2.7431193612 |
| PubMed_21979375_A1 | Down | -0.0947845613 |
| PubMed_21979375_A2 | Down | -1.0898759694 |
| GSE35957 | Up | 2.0705995001 |
| GSE36640 | Up | 5.2007603741 |
| GSE54402 | Down | -0.6745469771 |
| GSE9593 | Up | 0.3926264177 |
| GSE43922 | Down | -0.8327398826 |
| GSE24585 | Up | 1.6206202705 |
| GSE37065 | Up | 0.4454875885 |
| GSE28863_A1 | Up | 1.0880028832 |
| GSE28863_A2 | Up | 1.9680607060 |
| GSE28863_A3 | Down | -0.2645674807 |
| GSE28863_A4 | Down | -0.3502965274 |
| GSE48662 | Up | 0.1424183537 |
5. Regulation relationships with compounds/drugs/microRNAs
- Compounds
Not regulated by compounds
- Drugs
Not regulated by drugs
- MicroRNAs
- mirTarBase
No target information from mirTarBase
- mirTarBase
- mirRecord
No target information from mirRecord
- mirRecord
6. Text-mining results about the gene
Gene occurances in abstracts of cellular senescence-associated articles: This gene isn't in text-mining gene-sentence result.
