HCSGD entry for PCDHB16

1. General information

Official gene symbolPCDHB16
Entrez ID57717
Gene full nameprotocadherin beta 16
Other gene symbolsME1 PCDH-BETA16 PCDH3X PCDHB8a
Links to Entrez GeneLinks to Entrez Gene

2. Neighbors in the network

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This gene isn't in Literature mining network.

3. Gene ontology annotation

GO ID

GO term

Evidence

Category

GO:0005509Calcium ion bindingIEAmolecular_function
GO:0005886Plasma membraneIEAcellular_component
GO:0007156Homophilic cell adhesionIEAbiological_process
GO:0007268Synaptic transmissionTASbiological_process
GO:0007416Synapse assemblyTASbiological_process
GO:0016021Integral component of membraneNAScellular_component
GO:0016339Calcium-dependent cell-cell adhesionNASbiological_process
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4. Expression levels in datasets

  • Meta-analysis result

p-value upp-value downFDR upFDR down
0.00356432130.03824668140.16183172410.3682117410

  • Individual experiment result
    ( "-" represent NA in the specific microarray platform )

Data sourceUp or downLog fold change
GSE11954Up0.3432127462
GSE13712_SHEARDown-0.2388890730
GSE13712_STATICUp0.0839460162
GSE19018Down-0.6738778434
GSE19899_A1Down-0.2293715432
GSE19899_A2Down-2.7431193612
PubMed_21979375_A1Down-0.0947845613
PubMed_21979375_A2Down-1.0898759694
GSE35957Up2.0705995001
GSE36640Up5.2007603741
GSE54402Down-0.6745469771
GSE9593Up0.3926264177
GSE43922Down-0.8327398826
GSE24585Up1.6206202705
GSE37065Up0.4454875885
GSE28863_A1Up1.0880028832
GSE28863_A2Up1.9680607060
GSE28863_A3Down-0.2645674807
GSE28863_A4Down-0.3502965274
GSE48662Up0.1424183537

5. Regulation relationships with compounds/drugs/microRNAs

  • Compounds

Not regulated by compounds

  • Drugs

Not regulated by drugs

  • MicroRNAs

  • mirTarBase
No target information from mirTarBase
  • mirRecord
No target information from mirRecord

6. Text-mining results about the gene

Gene occurances in abstracts of cellular senescence-associated articles: This gene isn't in text-mining gene-sentence result.