HCSGD entry for SCAF4
1. General information
| Official gene symbol | SCAF4 |
|---|---|
| Entrez ID | 57466 |
| Gene full name | SR-related CTD-associated factor 4 |
| Other gene symbols | SFRS15 SRA4 |
| Links to Entrez Gene | Links to Entrez Gene |
2. Neighbors in the network
This gene isn't in PPI subnetwork.
3. Gene ontology annotation
GO ID | GO term | Evidence | Category |
|---|---|---|---|
| GO:0000166 | Nucleotide binding | IEA | molecular_function |
| GO:0003723 | RNA binding | IEA | molecular_function |
| GO:0005634 | Nucleus | IDA | cellular_component |
| GO:0005730 | Nucleolus | IDA | cellular_component |
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4. Expression levels in datasets
- Meta-analysis result
| p-value up | p-value down | FDR up | FDR down |
|---|---|---|---|
| 0.1013427339 | 0.8665458683 | 0.6628832256 | 1.0000000000 |
- Individual experiment result
( "-" represent NA in the specific microarray platform )
( "-" represent NA in the specific microarray platform )
| Data source | Up or down | Log fold change |
|---|---|---|
| GSE11954 | Up | 0.0140185915 |
| GSE13712_SHEAR | Up | 0.4807073465 |
| GSE13712_STATIC | Up | 0.1228388106 |
| GSE19018 | Down | -0.0683493418 |
| GSE19899_A1 | Down | -0.0083976518 |
| GSE19899_A2 | Up | 0.0042442868 |
| PubMed_21979375_A1 | Up | 0.1876010937 |
| PubMed_21979375_A2 | Up | 0.2612876625 |
| GSE35957 | Down | -0.3824039944 |
| GSE36640 | Down | -0.5489338559 |
| GSE54402 | Up | 0.1766957539 |
| GSE9593 | Down | -0.1039675824 |
| GSE43922 | Up | 0.1075063379 |
| GSE24585 | Up | 0.1365304736 |
| GSE37065 | Up | 0.0790172664 |
| GSE28863_A1 | Up | 0.6685601876 |
| GSE28863_A2 | Up | 0.7180476271 |
| GSE28863_A3 | Up | 0.1385362299 |
| GSE28863_A4 | Up | 0.0384817883 |
| GSE48662 | Up | 0.1231236350 |
5. Regulation relationships with compounds/drugs/microRNAs
- Compounds
Not regulated by compounds
- Drugs
Not regulated by drugs
- MicroRNAs
- mirTarBase
- mirTarBase
MiRNA_name | mirBase ID | miRTarBase ID | Experiment | Support type | References (Pubmed ID) |
|---|---|---|---|---|---|
| hsa-miR-16-5p | MIMAT0000069 | MIRT031980 | Proteomics | Functional MTI (Weak) | 18668040 |
| hsa-miR-16-5p | MIMAT0000069 | MIRT031980 | CLASH | Functional MTI (Weak) | 23622248 |
| hsa-let-7b-5p | MIMAT0000063 | MIRT032458 | Proteomics | Functional MTI (Weak) | 18668040 |
| hsa-miR-331-3p | MIMAT0000760 | MIRT043389 | CLASH | Functional MTI (Weak) | 23622248 |
| hsa-miR-25-3p | MIMAT0000081 | MIRT050312 | CLASH | Functional MTI (Weak) | 23622248 |
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- mirRecord
No target information from mirRecord
- mirRecord
6. Text-mining results about the gene
Gene occurances in abstracts of cellular senescence-associated articles: This gene isn't in text-mining gene-sentence result.
