HCSGD entry for SCAF4


1. General information

Official gene symbolSCAF4
Entrez ID57466
Gene full nameSR-related CTD-associated factor 4
Other gene symbolsSFRS15 SRA4
Links to Entrez GeneLinks to Entrez Gene

2. Neighbors in the network

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This gene isn't in Literature mining network.

3. Gene ontology annotation

GO ID

GO term

Evidence

Category

GO:0000166Nucleotide bindingIEAmolecular_function
GO:0003723RNA bindingIEAmolecular_function
GO:0005634NucleusIDAcellular_component
GO:0005730NucleolusIDAcellular_component
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4. Expression levels in datasets

  • Meta-analysis result

p-value upp-value downFDR upFDR down
0.10134273390.86654586830.66288322561.0000000000

  • Individual experiment result
    ( "-" represent NA in the specific microarray platform )

Data sourceUp or downLog fold change
GSE11954Up0.0140185915
GSE13712_SHEARUp0.4807073465
GSE13712_STATICUp0.1228388106
GSE19018Down-0.0683493418
GSE19899_A1Down-0.0083976518
GSE19899_A2Up0.0042442868
PubMed_21979375_A1Up0.1876010937
PubMed_21979375_A2Up0.2612876625
GSE35957Down-0.3824039944
GSE36640Down-0.5489338559
GSE54402Up0.1766957539
GSE9593Down-0.1039675824
GSE43922Up0.1075063379
GSE24585Up0.1365304736
GSE37065Up0.0790172664
GSE28863_A1Up0.6685601876
GSE28863_A2Up0.7180476271
GSE28863_A3Up0.1385362299
GSE28863_A4Up0.0384817883
GSE48662Up0.1231236350

5. Regulation relationships with compounds/drugs/microRNAs

  • Compounds

Not regulated by compounds

  • Drugs

Not regulated by drugs

  • MicroRNAs

  • mirTarBase

MiRNA_name

mirBase ID

miRTarBase ID

Experiment

Support type

References (Pubmed ID)

hsa-miR-16-5pMIMAT0000069MIRT031980ProteomicsFunctional MTI (Weak)18668040
hsa-miR-16-5pMIMAT0000069MIRT031980CLASHFunctional MTI (Weak)23622248
hsa-let-7b-5pMIMAT0000063MIRT032458ProteomicsFunctional MTI (Weak)18668040
hsa-miR-331-3pMIMAT0000760MIRT043389CLASHFunctional MTI (Weak)23622248
hsa-miR-25-3pMIMAT0000081MIRT050312CLASHFunctional MTI (Weak)23622248
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  • mirRecord
No target information from mirRecord

6. Text-mining results about the gene

Gene occurances in abstracts of cellular senescence-associated articles: This gene isn't in text-mining gene-sentence result.