HCSGD entry for ATF1
1. General information
Official gene symbol | ATF1 |
---|---|
Entrez ID | 466 |
Gene full name | activating transcription factor 1 |
Other gene symbols | EWS-ATF1 FUS/ATF-1 TREB36 |
Links to Entrez Gene | Links to Entrez Gene |
2. Neighbors in the network

This gene isn't in PPI subnetwork.
3. Gene ontology annotation
GO ID | GO term | Evidence | Category |
---|---|---|---|
GO:0002224 | Toll-like receptor signaling pathway | TAS | biological_process |
GO:0002755 | MyD88-dependent toll-like receptor signaling pathway | TAS | biological_process |
GO:0002756 | MyD88-independent toll-like receptor signaling pathway | TAS | biological_process |
GO:0003700 | Sequence-specific DNA binding transcription factor activity | TAS | molecular_function |
GO:0003705 | RNA polymerase II distal enhancer sequence-specific DNA binding transcription factor activity | IEA | molecular_function |
GO:0005515 | Protein binding | IPI | molecular_function |
GO:0005634 | Nucleus | IDA IEA | cellular_component |
GO:0005654 | Nucleoplasm | TAS | cellular_component |
GO:0005667 | Transcription factor complex | IEA | cellular_component |
GO:0010976 | Positive regulation of neuron projection development | IEA | biological_process |
GO:0014070 | Response to organic cyclic compound | IEA | biological_process |
GO:0032025 | Response to cobalt ion | IEA | biological_process |
GO:0032403 | Protein complex binding | IEA | molecular_function |
GO:0034134 | Toll-like receptor 2 signaling pathway | TAS | biological_process |
GO:0034138 | Toll-like receptor 3 signaling pathway | TAS | biological_process |
GO:0034142 | Toll-like receptor 4 signaling pathway | TAS | biological_process |
GO:0034146 | Toll-like receptor 5 signaling pathway | TAS | biological_process |
GO:0034162 | Toll-like receptor 9 signaling pathway | TAS | biological_process |
GO:0034166 | Toll-like receptor 10 signaling pathway | TAS | biological_process |
GO:0035666 | TRIF-dependent toll-like receptor signaling pathway | TAS | biological_process |
GO:0038123 | Toll-like receptor TLR1:TLR2 signaling pathway | TAS | biological_process |
GO:0038124 | Toll-like receptor TLR6:TLR2 signaling pathway | TAS | biological_process |
GO:0043565 | Sequence-specific DNA binding | IEA | molecular_function |
GO:0043623 | Cellular protein complex assembly | IEA | biological_process |
GO:0045087 | Innate immune response | TAS | biological_process |
GO:0045740 | Positive regulation of DNA replication | IEA | biological_process |
GO:0045944 | Positive regulation of transcription from RNA polymerase II promoter | IEA | biological_process |
GO:0046982 | Protein heterodimerization activity | IEA | molecular_function |
GO:0048011 | Neurotrophin TRK receptor signaling pathway | TAS | biological_process |
GO:0051403 | Stress-activated MAPK cascade | TAS | biological_process |
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4. Expression levels in datasets
- Meta-analysis result
p-value up | p-value down | FDR up | FDR down |
---|---|---|---|
0.8223787622 | 0.0558000912 | 0.9999902473 | 0.4443915885 |
- Individual experiment result
( "-" represent NA in the specific microarray platform )
( "-" represent NA in the specific microarray platform )
Data source | Up or down | Log fold change |
---|---|---|
GSE11954 | Down | -0.3177020136 |
GSE13712_SHEAR | Up | 0.3003974063 |
GSE13712_STATIC | Up | 0.0552688626 |
GSE19018 | Down | -0.1868355657 |
GSE19899_A1 | Down | -0.4965384284 |
GSE19899_A2 | Down | -0.4540178801 |
PubMed_21979375_A1 | Down | -0.3138860494 |
PubMed_21979375_A2 | Down | -0.3541613296 |
GSE35957 | Up | 0.0631287381 |
GSE36640 | Down | -0.8116269014 |
GSE54402 | Down | -0.2129997396 |
GSE9593 | Down | -0.0389830710 |
GSE43922 | Down | -0.2189525997 |
GSE24585 | Up | 0.4044918968 |
GSE37065 | Up | 0.1167189294 |
GSE28863_A1 | Up | 0.0798074097 |
GSE28863_A2 | Up | 0.1670475530 |
GSE28863_A3 | Down | -0.6116098748 |
GSE28863_A4 | Up | 0.0007985188 |
GSE48662 | Up | 0.1786101194 |
5. Regulation relationships with compounds/drugs/microRNAs
- Compounds
Not regulated by compounds
- Drugs
Name | Drug | Accession number |
---|---|---|
- MicroRNAs
- mirTarBase
- mirTarBase
MiRNA_name | mirBase ID | miRTarBase ID | Experiment | Support type | References (Pubmed ID) |
---|---|---|---|---|---|
hsa-miR-215-5p | MIMAT0000272 | MIRT024634 | Microarray | Functional MTI (Weak) | 19074876 |
hsa-miR-192-5p | MIMAT0000222 | MIRT026443 | Microarray | Functional MTI (Weak) | 19074876 |
hsa-miR-23a-5p | MIMAT0004496 | MIRT038958 | CLASH | Functional MTI (Weak) | 23622248 |
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- mirRecord
No target information from mirRecord
- mirRecord