HCSGD entry for LMO1

1. General information

Official gene symbolLMO1
Entrez ID4004
Gene full nameLIM domain only 1 (rhombotin 1)
Other gene symbolsRBTN1 RHOM1 TTG1
Links to Entrez GeneLinks to Entrez Gene

2. Neighbors in the network

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This gene isn't in PPI subnetwork.

3. Gene ontology annotation

GO ID

GO term

Evidence

Category

GO:0000122Negative regulation of transcription from RNA polymerase II promoterIEAbiological_process
GO:0005634NucleusIEA ISScellular_component
GO:0008270Zinc ion bindingIEAmolecular_function
GO:0045944Positive regulation of transcription from RNA polymerase II promoterIEA IMPbiological_process
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4. Expression levels in datasets

  • Meta-analysis result

p-value upp-value downFDR upFDR down
0.51658080620.89202236620.99999024731.0000000000

  • Individual experiment result
    ( "-" represent NA in the specific microarray platform )

Data sourceUp or downLog fold change
GSE11954Down-0.1003728644
GSE13712_SHEARDown-0.0449703075
GSE13712_STATICUp0.2863943305
GSE19018Up0.0245881348
GSE19899_A1Up0.0150921772
GSE19899_A2Up0.2110597564
PubMed_21979375_A1Up0.0412721508
PubMed_21979375_A2Up0.0092110644
GSE35957Up0.2306517347
GSE36640Up0.0631788723
GSE54402Down-0.0101590193
GSE9593Up0.0247349686
GSE43922Up0.1100712984
GSE24585Up0.0157567417
GSE37065Down-0.0611583535
GSE28863_A1Down-0.0541323335
GSE28863_A2Down-0.1038664353
GSE28863_A3Up0.2903268690
GSE28863_A4Up0.1023534239
GSE48662Up0.1420760905

5. Regulation relationships with compounds/drugs/microRNAs

  • Compounds

Not regulated by compounds

  • Drugs

Not regulated by drugs

  • MicroRNAs

    • mirTarBase
No target information from mirTarBase
    • mirRecord
No target information from mirRecord

6. Text-mining results about the gene

Gene occurances in abstracts of cellular senescence-associated articles: This gene isn't in text-mining gene-sentence result.