HCSGD entry for PTCHD1
1. General information
| Official gene symbol | PTCHD1 |
|---|---|
| Entrez ID | 139411 |
| Gene full name | patched domain containing 1 |
| Other gene symbols | |
| Links to Entrez Gene | Links to Entrez Gene |
2. Neighbors in the network
This gene isn't in PPI subnetwork.
3. Gene ontology annotation
GO ID | GO term | Evidence | Category |
|---|---|---|---|
| GO:0003674 | Molecular_function | ND | molecular_function |
| GO:0005886 | Plasma membrane | IDA | cellular_component |
| GO:0007224 | Smoothened signaling pathway | IDA | biological_process |
| GO:0008158 | Hedgehog receptor activity | IEA | molecular_function |
| GO:0016021 | Integral component of membrane | IEA | cellular_component |
| GO:0050890 | Cognition | IMP | biological_process |
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4. Expression levels in datasets
- Meta-analysis result
| p-value up | p-value down | FDR up | FDR down |
|---|---|---|---|
| 0.9364527716 | 0.0839196725 | 0.9999902473 | 0.5501493649 |
- Individual experiment result
( "-" represent NA in the specific microarray platform )
( "-" represent NA in the specific microarray platform )
| Data source | Up or down | Log fold change |
|---|---|---|
| GSE11954 | Down | -0.0149059928 |
| GSE13712_SHEAR | Up | 0.2069718471 |
| GSE13712_STATIC | Down | -0.1159995772 |
| GSE19018 | Down | -0.0407115913 |
| GSE19899_A1 | Up | 0.0149721790 |
| GSE19899_A2 | Down | -0.0190223224 |
| PubMed_21979375_A1 | Down | -0.0414623280 |
| PubMed_21979375_A2 | Down | -0.1124647750 |
| GSE35957 | Up | 0.0749425138 |
| GSE36640 | Up | 0.0181363401 |
| GSE54402 | Up | 0.1685288456 |
| GSE9593 | Up | 0.0388534909 |
| GSE43922 | Down | -0.0428905487 |
| GSE24585 | Down | -1.8385449701 |
| GSE37065 | Down | -0.0530094205 |
| GSE28863_A1 | Down | -0.3642082307 |
| GSE28863_A2 | Up | 0.0105104322 |
| GSE28863_A3 | Up | 0.1394846253 |
| GSE28863_A4 | Down | -0.0680148317 |
| GSE48662 | Down | -0.0471474473 |
5. Regulation relationships with compounds/drugs/microRNAs
- Compounds
Not regulated by compounds
- Drugs
Not regulated by drugs
- MicroRNAs
- mirTarBase
- mirTarBase
MiRNA_name | mirBase ID | miRTarBase ID | Experiment | Support type | References (Pubmed ID) |
|---|---|---|---|---|---|
| hsa-miR-128-3p | MIMAT0000424 | MIRT021976 | Microarray | Functional MTI (Weak) | 17612493 |
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- mirRecord
No target information from mirRecord
- mirRecord
6. Text-mining results about the gene
Gene occurances in abstracts of cellular senescence-associated articles: This gene isn't in text-mining gene-sentence result.
