HCSGD entry for TRIM40

1. General information

Official gene symbolTRIM40
Entrez ID135644
Gene full nametripartite motif containing 40
Other gene symbolsRNF35
Links to Entrez GeneLinks to Entrez Gene

2. Neighbors in the network

color bar
This gene isn't in PPI subnetwork.

3. Gene ontology annotation

GO ID

GO term

Evidence

Category

GO:0005622IntracellularIEAcellular_component
GO:0008270Zinc ion bindingIEAmolecular_function
GO:0030308Negative regulation of cell growthIEAbiological_process
GO:0032088Negative regulation of NF-kappaB transcription factor activityIEAbiological_process
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4. Expression levels in datasets

  • Meta-analysis result

p-value upp-value downFDR upFDR down
0.54806877020.90631404960.99999024731.0000000000

  • Individual experiment result
    ( "-" represent NA in the specific microarray platform )

Data sourceUp or downLog fold change
GSE11954Up0.0692348251
GSE13712_SHEARUp0.1314042288
GSE13712_STATICUp0.1095735642
GSE19018Up0.1829682499
GSE19899_A1Up0.0120876389
GSE19899_A2Up0.0602652315
PubMed_21979375_A1Up0.1089261008
PubMed_21979375_A2Down-0.2472149991
GSE35957Up0.1203116817
GSE36640Up0.0904525635
GSE54402Up0.0957713602
GSE9593Down-0.0041677542
GSE43922Up0.0312296221
GSE24585Down-0.0879186241
GSE37065Up0.1056536366
GSE28863_A1Down-0.0842489973
GSE28863_A2Up0.1068587647
GSE28863_A3Up0.0098406011
GSE28863_A4Up0.0833762540
GSE48662Up0.1027460288

5. Regulation relationships with compounds/drugs/microRNAs

  • Compounds

Not regulated by compounds

  • Drugs

Not regulated by drugs

  • MicroRNAs

    • mirTarBase

MiRNA_name

mirBase ID

miRTarBase ID

Experiment

Support type

References (Pubmed ID)

hsa-miR-335-5pMIMAT0000765MIRT017261MicroarrayFunctional MTI (Weak)18185580
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    • mirRecord
No target information from mirRecord

6. Text-mining results about the gene

Gene occurances in abstracts of cellular senescence-associated articles: This gene isn't in text-mining gene-sentence result.