HCSGD entry for TRIM40
1. General information
| Official gene symbol | TRIM40 |
|---|---|
| Entrez ID | 135644 |
| Gene full name | tripartite motif containing 40 |
| Other gene symbols | RNF35 |
| Links to Entrez Gene | Links to Entrez Gene |
2. Neighbors in the network
This gene isn't in Literature mining network.
3. Gene ontology annotation
GO ID | GO term | Evidence | Category |
|---|---|---|---|
| GO:0005622 | Intracellular | IEA | cellular_component |
| GO:0008270 | Zinc ion binding | IEA | molecular_function |
| GO:0030308 | Negative regulation of cell growth | IEA | biological_process |
| GO:0032088 | Negative regulation of NF-kappaB transcription factor activity | IEA | biological_process |
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4. Expression levels in datasets
- Meta-analysis result
| p-value up | p-value down | FDR up | FDR down |
|---|---|---|---|
| 0.5480687702 | 0.9063140496 | 0.9999902473 | 1.0000000000 |
- Individual experiment result
( "-" represent NA in the specific microarray platform )
( "-" represent NA in the specific microarray platform )
| Data source | Up or down | Log fold change |
|---|---|---|
| GSE11954 | Up | 0.0692348251 |
| GSE13712_SHEAR | Up | 0.1314042288 |
| GSE13712_STATIC | Up | 0.1095735642 |
| GSE19018 | Up | 0.1829682499 |
| GSE19899_A1 | Up | 0.0120876389 |
| GSE19899_A2 | Up | 0.0602652315 |
| PubMed_21979375_A1 | Up | 0.1089261008 |
| PubMed_21979375_A2 | Down | -0.2472149991 |
| GSE35957 | Up | 0.1203116817 |
| GSE36640 | Up | 0.0904525635 |
| GSE54402 | Up | 0.0957713602 |
| GSE9593 | Down | -0.0041677542 |
| GSE43922 | Up | 0.0312296221 |
| GSE24585 | Down | -0.0879186241 |
| GSE37065 | Up | 0.1056536366 |
| GSE28863_A1 | Down | -0.0842489973 |
| GSE28863_A2 | Up | 0.1068587647 |
| GSE28863_A3 | Up | 0.0098406011 |
| GSE28863_A4 | Up | 0.0833762540 |
| GSE48662 | Up | 0.1027460288 |
5. Regulation relationships with compounds/drugs/microRNAs
- Compounds
Not regulated by compounds
- Drugs
Not regulated by drugs
- MicroRNAs
- mirTarBase
MiRNA_name | mirBase ID | miRTarBase ID | Experiment | Support type | References (Pubmed ID) |
|---|---|---|---|---|---|
| hsa-miR-335-5p | MIMAT0000765 | MIRT017261 | Microarray | Functional MTI (Weak) | 18185580 |
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- mirRecord
No target information from mirRecord
6. Text-mining results about the gene
Gene occurances in abstracts of cellular senescence-associated articles: This gene isn't in text-mining gene-sentence result.
