HCSGD entry for SHROOM1
1. General information
| Official gene symbol | SHROOM1 |
|---|---|
| Entrez ID | 134549 |
| Gene full name | shroom family member 1 |
| Other gene symbols | APXL2 |
| Links to Entrez Gene | Links to Entrez Gene |
2. Neighbors in the network
This gene isn't in PPI subnetwork.
3. Gene ontology annotation
GO ID | GO term | Evidence | Category |
|---|---|---|---|
| GO:0000902 | Cell morphogenesis | IEA ISS | biological_process |
| GO:0005737 | Cytoplasm | IEA | cellular_component |
| GO:0005874 | Microtubule | IEA | cellular_component |
| GO:0016460 | Myosin II complex | IEA ISS | cellular_component |
| GO:0051015 | Actin filament binding | IEA ISS | molecular_function |
| GO:0051017 | Actin filament bundle assembly | IEA ISS | biological_process |
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4. Expression levels in datasets
- Meta-analysis result
| p-value up | p-value down | FDR up | FDR down |
|---|---|---|---|
| 0.2063803541 | 0.9582321150 | 0.8755862830 | 1.0000000000 |
- Individual experiment result
( "-" represent NA in the specific microarray platform )
( "-" represent NA in the specific microarray platform )
| Data source | Up or down | Log fold change |
|---|---|---|
| GSE11954 | Up | 0.0934640978 |
| GSE13712_SHEAR | Down | -0.0565267358 |
| GSE13712_STATIC | Up | 0.0599746425 |
| GSE19018 | Up | 0.0100517801 |
| GSE19899_A1 | Up | 0.0762667523 |
| GSE19899_A2 | Up | 0.7167731493 |
| PubMed_21979375_A1 | Down | -0.0993779309 |
| PubMed_21979375_A2 | Up | 0.4827276631 |
| GSE35957 | Down | -0.1864135656 |
| GSE36640 | Up | 0.2158185414 |
| GSE54402 | Up | 0.0500292858 |
| GSE9593 | Up | 0.0018423072 |
| GSE43922 | Up | 0.4481933333 |
| GSE24585 | Up | 0.1716957961 |
| GSE37065 | Down | -0.0279651365 |
| GSE28863_A1 | Down | -0.0733938113 |
| GSE28863_A2 | Up | 0.0390657959 |
| GSE28863_A3 | Up | 0.1209786526 |
| GSE28863_A4 | Down | -0.0398924563 |
| GSE48662 | Up | 0.2398382323 |
5. Regulation relationships with compounds/drugs/microRNAs
- Compounds
Not regulated by compounds
- Drugs
Not regulated by drugs
- MicroRNAs
- mirTarBase
No target information from mirTarBase
- mirTarBase
- mirRecord
No target information from mirRecord
- mirRecord
6. Text-mining results about the gene
Gene occurances in abstracts of cellular senescence-associated articles: This gene isn't in text-mining gene-sentence result.
