HCSGD entry for COL12A1
1. General information
| Official gene symbol | COL12A1 |
|---|---|
| Entrez ID | 1303 |
| Gene full name | collagen, type XII, alpha 1 |
| Other gene symbols | BA209D8.1 COL12A1L DJ234P15.1 |
| Links to Entrez Gene | Links to Entrez Gene |
2. Neighbors in the network
This gene isn't in PPI subnetwork.
3. Gene ontology annotation
GO ID | GO term | Evidence | Category |
|---|---|---|---|
| GO:0001501 | Skeletal system development | TAS | biological_process |
| GO:0005576 | Extracellular region | TAS | cellular_component |
| GO:0005595 | Collagen type XII | NAS | cellular_component |
| GO:0005615 | Extracellular space | IDA | cellular_component |
| GO:0005788 | Endoplasmic reticulum lumen | TAS | cellular_component |
| GO:0007155 | Cell adhesion | IEA | biological_process |
| GO:0022617 | Extracellular matrix disassembly | TAS | biological_process |
| GO:0030020 | Extracellular matrix structural constituent conferring tensile strength | NAS | molecular_function |
| GO:0030198 | Extracellular matrix organization | TAS | biological_process |
| GO:0030199 | Collagen fibril organization | NAS | biological_process |
| GO:0030574 | Collagen catabolic process | TAS | biological_process |
| GO:0031012 | Extracellular matrix | IDA | cellular_component |
| GO:0070062 | Extracellular vesicular exosome | IDA | cellular_component |
Entries Per Page
Displaying Page of
4. Expression levels in datasets
- Meta-analysis result
| p-value up | p-value down | FDR up | FDR down |
|---|---|---|---|
| 0.8641076897 | 0.0003244862 | 0.9999902473 | 0.0331038760 |
- Individual experiment result
( "-" represent NA in the specific microarray platform )
( "-" represent NA in the specific microarray platform )
| Data source | Up or down | Log fold change |
|---|---|---|
| GSE11954 | Down | -1.3796615540 |
| GSE13712_SHEAR | Down | -0.2961102102 |
| GSE13712_STATIC | Down | -0.8103528808 |
| GSE19018 | Down | -0.0967157014 |
| GSE19899_A1 | Down | -0.9465868733 |
| GSE19899_A2 | Down | -1.5872814026 |
| PubMed_21979375_A1 | Down | -2.5355872463 |
| PubMed_21979375_A2 | Down | -2.0637573912 |
| GSE35957 | Up | 0.2640688592 |
| GSE36640 | Down | -0.1997316644 |
| GSE54402 | Down | -0.5122572542 |
| GSE9593 | Down | -0.9771645350 |
| GSE43922 | Down | -1.3239656034 |
| GSE24585 | Down | -0.5524891135 |
| GSE37065 | Down | -1.3953786369 |
| GSE28863_A1 | Up | 0.7679312386 |
| GSE28863_A2 | Up | 0.3965273852 |
| GSE28863_A3 | Up | 0.3785966457 |
| GSE28863_A4 | Down | -0.6128928442 |
| GSE48662 | Up | 0.4880657998 |
5. Regulation relationships with compounds/drugs/microRNAs
- Compounds
Not regulated by compounds
- Drugs
Not regulated by drugs
- MicroRNAs
- mirTarBase
- mirTarBase
MiRNA_name | mirBase ID | miRTarBase ID | Experiment | Support type | References (Pubmed ID) |
|---|---|---|---|---|---|
| hsa-miR-375 | MIMAT0000728 | MIRT020009 | Microarray | Functional MTI (Weak) | 20215506 |
| hsa-miR-9-5p | MIMAT0000441 | MIRT021464 | Microarray | Functional MTI (Weak) | 17612493 |
| hsa-miR-124-3p | MIMAT0000422 | MIRT023070 | Proteomics;Microarray | Functional MTI (Weak) | 18668037 |
| hsa-miR-1 | MIMAT0000416 | MIRT024050 | Proteomics;Microarray | Functional MTI (Weak) | 18668037 |
Entries Per Page
Displaying Page of
- mirRecord
No target information from mirRecord
- mirRecord
6. Text-mining results about the gene
Gene occurances in abstracts of cellular senescence-associated articles: This gene isn't in text-mining gene-sentence result.
