HCSGD entry for COL12A1
1. General information
Official gene symbol | COL12A1 |
---|---|
Entrez ID | 1303 |
Gene full name | collagen, type XII, alpha 1 |
Other gene symbols | BA209D8.1 COL12A1L DJ234P15.1 |
Links to Entrez Gene | Links to Entrez Gene |
2. Neighbors in the network

This gene isn't in Literature mining network.
3. Gene ontology annotation
GO ID | GO term | Evidence | Category |
---|---|---|---|
GO:0001501 | Skeletal system development | TAS | biological_process |
GO:0005576 | Extracellular region | TAS | cellular_component |
GO:0005595 | Collagen type XII | NAS | cellular_component |
GO:0005615 | Extracellular space | IDA | cellular_component |
GO:0005788 | Endoplasmic reticulum lumen | TAS | cellular_component |
GO:0007155 | Cell adhesion | IEA | biological_process |
GO:0022617 | Extracellular matrix disassembly | TAS | biological_process |
GO:0030020 | Extracellular matrix structural constituent conferring tensile strength | NAS | molecular_function |
GO:0030198 | Extracellular matrix organization | TAS | biological_process |
GO:0030199 | Collagen fibril organization | NAS | biological_process |
GO:0030574 | Collagen catabolic process | TAS | biological_process |
GO:0031012 | Extracellular matrix | IDA | cellular_component |
GO:0070062 | Extracellular vesicular exosome | IDA | cellular_component |
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4. Expression levels in datasets
- Meta-analysis result
p-value up | p-value down | FDR up | FDR down |
---|---|---|---|
0.8641076897 | 0.0003244862 | 0.9999902473 | 0.0331038760 |
- Individual experiment result
( "-" represent NA in the specific microarray platform )
( "-" represent NA in the specific microarray platform )
Data source | Up or down | Log fold change |
---|---|---|
GSE11954 | Down | -1.3796615540 |
GSE13712_SHEAR | Down | -0.2961102102 |
GSE13712_STATIC | Down | -0.8103528808 |
GSE19018 | Down | -0.0967157014 |
GSE19899_A1 | Down | -0.9465868733 |
GSE19899_A2 | Down | -1.5872814026 |
PubMed_21979375_A1 | Down | -2.5355872463 |
PubMed_21979375_A2 | Down | -2.0637573912 |
GSE35957 | Up | 0.2640688592 |
GSE36640 | Down | -0.1997316644 |
GSE54402 | Down | -0.5122572542 |
GSE9593 | Down | -0.9771645350 |
GSE43922 | Down | -1.3239656034 |
GSE24585 | Down | -0.5524891135 |
GSE37065 | Down | -1.3953786369 |
GSE28863_A1 | Up | 0.7679312386 |
GSE28863_A2 | Up | 0.3965273852 |
GSE28863_A3 | Up | 0.3785966457 |
GSE28863_A4 | Down | -0.6128928442 |
GSE48662 | Up | 0.4880657998 |
5. Regulation relationships with compounds/drugs/microRNAs
- Compounds
Not regulated by compounds
- Drugs
Not regulated by drugs
- MicroRNAs
- mirTarBase
MiRNA_name | mirBase ID | miRTarBase ID | Experiment | Support type | References (Pubmed ID) |
---|---|---|---|---|---|
hsa-miR-375 | MIMAT0000728 | MIRT020009 | Microarray | Functional MTI (Weak) | 20215506 |
hsa-miR-9-5p | MIMAT0000441 | MIRT021464 | Microarray | Functional MTI (Weak) | 17612493 |
hsa-miR-124-3p | MIMAT0000422 | MIRT023070 | Proteomics;Microarray | Functional MTI (Weak) | 18668037 |
hsa-miR-1 | MIMAT0000416 | MIRT024050 | Proteomics;Microarray | Functional MTI (Weak) | 18668037 |
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