HCSGD entry for COL12A1


1. General information

Official gene symbolCOL12A1
Entrez ID1303
Gene full namecollagen, type XII, alpha 1
Other gene symbolsBA209D8.1 COL12A1L DJ234P15.1
Links to Entrez GeneLinks to Entrez Gene

2. Neighbors in the network

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This gene isn't in Literature mining network.

3. Gene ontology annotation

GO ID

GO term

Evidence

Category

GO:0001501Skeletal system developmentTASbiological_process
GO:0005576Extracellular regionTAScellular_component
GO:0005595Collagen type XIINAScellular_component
GO:0005615Extracellular spaceIDAcellular_component
GO:0005788Endoplasmic reticulum lumenTAScellular_component
GO:0007155Cell adhesionIEAbiological_process
GO:0022617Extracellular matrix disassemblyTASbiological_process
GO:0030020Extracellular matrix structural constituent conferring tensile strengthNASmolecular_function
GO:0030198Extracellular matrix organizationTASbiological_process
GO:0030199Collagen fibril organizationNASbiological_process
GO:0030574Collagen catabolic processTASbiological_process
GO:0031012Extracellular matrixIDAcellular_component
GO:0070062Extracellular vesicular exosomeIDAcellular_component
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4. Expression levels in datasets

  • Meta-analysis result

p-value upp-value downFDR upFDR down
0.86410768970.00032448620.99999024730.0331038760

  • Individual experiment result
    ( "-" represent NA in the specific microarray platform )

Data sourceUp or downLog fold change
GSE11954Down-1.3796615540
GSE13712_SHEARDown-0.2961102102
GSE13712_STATICDown-0.8103528808
GSE19018Down-0.0967157014
GSE19899_A1Down-0.9465868733
GSE19899_A2Down-1.5872814026
PubMed_21979375_A1Down-2.5355872463
PubMed_21979375_A2Down-2.0637573912
GSE35957Up0.2640688592
GSE36640Down-0.1997316644
GSE54402Down-0.5122572542
GSE9593Down-0.9771645350
GSE43922Down-1.3239656034
GSE24585Down-0.5524891135
GSE37065Down-1.3953786369
GSE28863_A1Up0.7679312386
GSE28863_A2Up0.3965273852
GSE28863_A3Up0.3785966457
GSE28863_A4Down-0.6128928442
GSE48662Up0.4880657998

5. Regulation relationships with compounds/drugs/microRNAs

  • Compounds

Not regulated by compounds

  • Drugs

Not regulated by drugs

  • MicroRNAs

  • mirTarBase

MiRNA_name

mirBase ID

miRTarBase ID

Experiment

Support type

References (Pubmed ID)

hsa-miR-375MIMAT0000728MIRT020009MicroarrayFunctional MTI (Weak)20215506
hsa-miR-9-5pMIMAT0000441MIRT021464MicroarrayFunctional MTI (Weak)17612493
hsa-miR-124-3pMIMAT0000422MIRT023070Proteomics;MicroarrayFunctional MTI (Weak)18668037
hsa-miR-1MIMAT0000416MIRT024050Proteomics;MicroarrayFunctional MTI (Weak)18668037
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  • mirRecord
No target information from mirRecord

6. Text-mining results about the gene

Gene occurances in abstracts of cellular senescence-associated articles: This gene isn't in text-mining gene-sentence result.