HCSGD entry for ATG16L2
1. General information
| Official gene symbol | ATG16L2 |
|---|---|
| Entrez ID | 89849 |
| Gene full name | autophagy related 16-like 2 (S. cerevisiae) |
| Other gene symbols | ATG16B WDR80 |
| Links to Entrez Gene | Links to Entrez Gene |
2. Neighbors in the network
This gene isn't in Literature mining network.
3. Gene ontology annotation
GO ID | GO term | Evidence | Category |
|---|---|---|---|
| GO:0005737 | Cytoplasm | IEA | cellular_component |
| GO:0006914 | Autophagy | IEA | biological_process |
| GO:0015031 | Protein transport | IEA | biological_process |
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4. Expression levels in datasets
- Meta-analysis result
| p-value up | p-value down | FDR up | FDR down |
|---|---|---|---|
| 0.7069919418 | 0.5856407735 | 0.9999902473 | 1.0000000000 |
- Individual experiment result
( "-" represent NA in the specific microarray platform )
( "-" represent NA in the specific microarray platform )
| Data source | Up or down | Log fold change |
|---|---|---|
| GSE11954 | Down | -0.0292389373 |
| GSE13712_SHEAR | Down | -0.3943839627 |
| GSE13712_STATIC | Up | 0.0847587486 |
| GSE19018 | Up | 0.1374869532 |
| GSE19899_A1 | Up | 0.0550164084 |
| GSE19899_A2 | Down | -0.2398103156 |
| PubMed_21979375_A1 | Down | -0.1518199190 |
| PubMed_21979375_A2 | Down | -0.1049071413 |
| GSE35957 | Down | -0.1285190868 |
| GSE36640 | Down | -0.0706731215 |
| GSE54402 | Up | 0.1001713317 |
| GSE9593 | Down | -0.1143394555 |
| GSE43922 | Up | 0.0335580896 |
| GSE24585 | Up | 0.1393495216 |
| GSE37065 | Up | 0.2331054570 |
| GSE28863_A1 | Down | -0.0258552303 |
| GSE28863_A2 | Down | -0.1415597133 |
| GSE28863_A3 | Up | 0.2205096378 |
| GSE28863_A4 | Up | 0.0988569188 |
| GSE48662 | Up | 0.0212632174 |
5. Regulation relationships with compounds/drugs/microRNAs
- Compounds
Not regulated by compounds
- Drugs
Not regulated by drugs
- MicroRNAs
- mirTarBase
MiRNA_name | mirBase ID | miRTarBase ID | Experiment | Support type | References (Pubmed ID) |
|---|---|---|---|---|---|
| hsa-miR-335-5p | MIMAT0000765 | MIRT017121 | Microarray | Functional MTI (Weak) | 18185580 |
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- mirRecord
No target information from mirRecord
6. Text-mining results about the gene
Gene occurances in abstracts of cellular senescence-associated articles: This gene isn't in text-mining gene-sentence result.
