HCSGD entry for FAM172A
1. General information
| Official gene symbol | FAM172A |
|---|---|
| Entrez ID | 83989 |
| Gene full name | family with sequence similarity 172, member A |
| Other gene symbols | C5orf21 |
| Links to Entrez Gene | Links to Entrez Gene |
2. Neighbors in the network
This gene isn't in Literature mining network.
3. Gene ontology annotation
GO ID | GO term | Evidence | Category |
|---|---|---|---|
| GO:0005576 | Extracellular region | IEA | cellular_component |
| GO:0005783 | Endoplasmic reticulum | IDA | cellular_component |
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4. Expression levels in datasets
- Meta-analysis result
| p-value up | p-value down | FDR up | FDR down |
|---|---|---|---|
| 0.6066118916 | 0.0384621557 | 0.9999902473 | 0.3692877871 |
- Individual experiment result
( "-" represent NA in the specific microarray platform )
( "-" represent NA in the specific microarray platform )
| Data source | Up or down | Log fold change |
|---|---|---|
| GSE11954 | Down | -0.1628510383 |
| GSE13712_SHEAR | Down | -0.6022166027 |
| GSE13712_STATIC | Down | -0.4346914549 |
| GSE19018 | Up | 0.6852509833 |
| GSE19899_A1 | Down | -0.1765466905 |
| GSE19899_A2 | Down | -0.4186560810 |
| PubMed_21979375_A1 | Down | -0.7447692553 |
| PubMed_21979375_A2 | Down | -0.5134412271 |
| GSE35957 | Up | 0.9772875266 |
| GSE36640 | Up | 0.3574365627 |
| GSE54402 | Down | -0.1587847089 |
| GSE9593 | Up | 0.2484952374 |
| GSE43922 | Down | -0.4310493425 |
| GSE24585 | Up | 0.0047662534 |
| GSE37065 | Down | -0.4440403304 |
| GSE28863_A1 | Up | 0.0995383288 |
| GSE28863_A2 | Down | -0.0373459384 |
| GSE28863_A3 | Down | -0.1500291173 |
| GSE28863_A4 | Down | -0.4649731572 |
| GSE48662 | Up | 0.3334257799 |
5. Regulation relationships with compounds/drugs/microRNAs
- Compounds
Not regulated by compounds
- Drugs
Not regulated by drugs
- MicroRNAs
- mirTarBase
MiRNA_name | mirBase ID | miRTarBase ID | Experiment | Support type | References (Pubmed ID) |
|---|---|---|---|---|---|
| hsa-miR-421 | MIMAT0003339 | MIRT039397 | CLASH | Functional MTI (Weak) | 23622248 |
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- mirRecord
No target information from mirRecord
6. Text-mining results about the gene
Gene occurances in abstracts of cellular senescence-associated articles: This gene isn't in text-mining gene-sentence result.
