HCSGD entry for TULP1

1. General information

Official gene symbolTULP1
Entrez ID7287
Gene full nametubby like protein 1
Other gene symbolsLCA15 RP14 TUBL1
Links to Entrez GeneLinks to Entrez Gene

2. Neighbors in the network

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This gene isn't in Literature mining network.

3. Gene ontology annotation

GO ID

GO term

Evidence

Category

GO:0001750Photoreceptor outer segmentISScellular_component
GO:0001917Photoreceptor inner segmentISScellular_component
GO:0005515Protein bindingIPImolecular_function
GO:0005546Phosphatidylinositol-4,5-bisphosphate bindingIDAmolecular_function
GO:0005576Extracellular regionIEAcellular_component
GO:0005737CytoplasmIEAcellular_component
GO:0005886Plasma membraneIDAcellular_component
GO:0006909PhagocytosisIEAbiological_process
GO:0007601Visual perceptionIEAbiological_process
GO:0007602PhototransductionIEAbiological_process
GO:0008020G-protein coupled photoreceptor activityIEAmolecular_function
GO:0016358Dendrite developmentISSbiological_process
GO:0030054Cell junctionIEAcellular_component
GO:0042462Eye photoreceptor cell developmentISSbiological_process
GO:0042995Cell projectionIDAcellular_component
GO:0045202SynapseISScellular_component
GO:0045494Photoreceptor cell maintenanceISSbiological_process
GO:0050766Positive regulation of phagocytosisIDAbiological_process
GO:0051015Actin filament bindingIDAmolecular_function
GO:0060041Retina development in camera-type eyeIEAbiological_process
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4. Expression levels in datasets

  • Meta-analysis result

p-value upp-value downFDR upFDR down
0.35512939100.72830951330.99999024731.0000000000

  • Individual experiment result
    ( "-" represent NA in the specific microarray platform )

Data sourceUp or downLog fold change
GSE11954Down-0.1282782745
GSE13712_SHEARUp0.1414310819
GSE13712_STATICDown-0.1408610256
GSE19018Up0.1038687893
GSE19899_A1Up0.0249525349
GSE19899_A2Up0.2293525631
PubMed_21979375_A1Down-0.1709205216
PubMed_21979375_A2Up0.2644548594
GSE35957Up0.2464750264
GSE36640Up0.0959078623
GSE54402Down-0.0870136183
GSE9593Up0.3704859126
GSE43922Up0.0261317361
GSE24585Down-0.0993916034
GSE37065Down-0.0335900286
GSE28863_A1Down-0.2028563344
GSE28863_A2Down-0.0529196567
GSE28863_A3Up0.3913382205
GSE28863_A4Up0.1686589744
GSE48662Down-0.0522397639

5. Regulation relationships with compounds/drugs/microRNAs

  • Compounds

Not regulated by compounds

  • Drugs

Not regulated by drugs

  • MicroRNAs

  • mirTarBase
No target information from mirTarBase
  • mirRecord
No target information from mirRecord

6. Text-mining results about the gene

Gene occurances in abstracts of cellular senescence-associated articles: This gene isn't in text-mining gene-sentence result.