HCSGD entry for BRDT
1. General information
| Official gene symbol | BRDT |
|---|---|
| Entrez ID | 676 |
| Gene full name | bromodomain, testis-specific |
| Other gene symbols | BRD6 CT9 |
| Links to Entrez Gene | Links to Entrez Gene |
2. Neighbors in the network
This gene isn't in Literature mining network.
3. Gene ontology annotation
GO ID | GO term | Evidence | Category |
|---|---|---|---|
| GO:0001207 | Histone displacement | IEA ISS | biological_process |
| GO:0003713 | Transcription coactivator activity | TAS | molecular_function |
| GO:0005634 | Nucleus | IEA ISS | cellular_component |
| GO:0006338 | Chromatin remodeling | IEA ISS | biological_process |
| GO:0006351 | Transcription, DNA-templated | IEA | biological_process |
| GO:0006397 | MRNA processing | IEA | biological_process |
| GO:0007140 | Male meiosis | ISS | biological_process |
| GO:0007141 | Male meiosis I | IEA ISS | biological_process |
| GO:0007283 | Spermatogenesis | IEA ISS | biological_process |
| GO:0008380 | RNA splicing | IEA | biological_process |
| GO:0030154 | Cell differentiation | IEA | biological_process |
| GO:0042393 | Histone binding | IDA | molecular_function |
| GO:0043484 | Regulation of RNA splicing | IEA ISS | biological_process |
| GO:0051039 | Positive regulation of transcription during meiosis | IEA ISS | biological_process |
| GO:0070577 | Histone acetyl-lysine binding | IEA ISS | molecular_function |
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4. Expression levels in datasets
- Meta-analysis result
| p-value up | p-value down | FDR up | FDR down |
|---|---|---|---|
| 0.3447633753 | 0.9624692603 | 0.9999902473 | 1.0000000000 |
- Individual experiment result
( "-" represent NA in the specific microarray platform )
( "-" represent NA in the specific microarray platform )
| Data source | Up or down | Log fold change |
|---|---|---|
| GSE11954 | Up | 0.0637520657 |
| GSE13712_SHEAR | Up | 0.1426921667 |
| GSE13712_STATIC | Up | 0.0281201243 |
| GSE19018 | Up | 0.3350212899 |
| GSE19899_A1 | Down | -0.0288173476 |
| GSE19899_A2 | Up | 0.0519084366 |
| PubMed_21979375_A1 | Up | 0.1640959479 |
| PubMed_21979375_A2 | Up | 0.0732094008 |
| GSE35957 | Up | 0.2559059472 |
| GSE36640 | Up | 0.1173242443 |
| GSE54402 | Up | 0.0188494962 |
| GSE9593 | Up | 0.2709203721 |
| GSE43922 | Up | 0.0178024889 |
| GSE24585 | Up | 0.1418314256 |
| GSE37065 | Up | 0.0426568535 |
| GSE28863_A1 | Down | -0.0498838727 |
| GSE28863_A2 | Up | 0.0680795527 |
| GSE28863_A3 | Up | 0.0604860026 |
| GSE28863_A4 | Up | 0.0288402906 |
| GSE48662 | Down | -0.0111629695 |
5. Regulation relationships with compounds/drugs/microRNAs
- Compounds
Not regulated by compounds
- Drugs
Not regulated by drugs
- MicroRNAs
- mirTarBase
MiRNA_name | mirBase ID | miRTarBase ID | Experiment | Support type | References (Pubmed ID) |
|---|---|---|---|---|---|
| hsa-miR-1 | MIMAT0000416 | MIRT023817 | Microarray | Functional MTI (Weak) | 18668037 |
| hsa-miR-26b-5p | MIMAT0000083 | MIRT029810 | Microarray | Functional MTI (Weak) | 19088304 |
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- mirRecord
No target information from mirRecord
6. Text-mining results about the gene
Gene occurances in abstracts of cellular senescence-associated articles: This gene isn't in text-mining gene-sentence result.
