HCSGD entry for BBS1

1. General information

Official gene symbolBBS1
Entrez ID582
Gene full nameBardet-Biedl syndrome 1
Other gene symbolsBBS2L2
Links to Entrez GeneLinks to Entrez Gene

2. Neighbors in the network

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This gene isn't in Literature mining network.

3. Gene ontology annotation

GO ID

GO term

Evidence

Category

GO:0001103RNA polymerase II repressing transcription factor bindingIPImolecular_function
GO:0001895Retina homeostasisIMPbiological_process
GO:0005113Patched bindingIPImolecular_function
GO:0005119Smoothened bindingIPImolecular_function
GO:0005515Protein bindingIPImolecular_function
GO:0005737CytoplasmIEAcellular_component
GO:0005815Microtubule organizing centerIEAcellular_component
GO:0007601Visual perceptionIEAbiological_process
GO:0034464BBSomeIDAcellular_component
GO:0035058Nonmotile primary cilium assemblyIMPbiological_process
GO:0042384Cilium assemblyIMPbiological_process
GO:0043001Golgi to plasma membrane protein transportIMPbiological_process
GO:0045494Photoreceptor cell maintenanceIMPbiological_process
GO:0050896Response to stimulusIEAbiological_process
GO:0060170Ciliary membraneIEAcellular_component
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4. Expression levels in datasets

  • Meta-analysis result

p-value upp-value downFDR upFDR down
0.45384193610.32467009610.99999024731.0000000000

  • Individual experiment result
    ( "-" represent NA in the specific microarray platform )

Data sourceUp or downLog fold change
GSE11954Down-0.0920023756
GSE13712_SHEARDown-0.4672010139
GSE13712_STATICDown-0.1126962033
GSE19018Up0.2323614346
GSE19899_A1Down-0.1025217333
GSE19899_A2Down-0.0251463930
PubMed_21979375_A1Down-0.7154734672
PubMed_21979375_A2Up0.0833993641
GSE35957Up0.2353761789
GSE36640Up0.3021735457
GSE54402Down-0.3161020757
GSE9593Up0.3375789283
GSE43922Down-0.4181625203
GSE24585Up0.5995043124
GSE37065Down-0.0835520067
GSE28863_A1Up0.2832616043
GSE28863_A2Down-0.0061311069
GSE28863_A3Down-0.0443544845
GSE28863_A4Down-0.0414004475
GSE48662Up0.2494506644

5. Regulation relationships with compounds/drugs/microRNAs

  • Compounds

Not regulated by compounds

  • Drugs

Not regulated by drugs

  • MicroRNAs

  • mirTarBase
No target information from mirTarBase
  • mirRecord
No target information from mirRecord

6. Text-mining results about the gene

Gene occurances in abstracts of cellular senescence-associated articles: This gene isn't in text-mining gene-sentence result.