HCSGD entry for SALL3
1. General information
| Official gene symbol | SALL3 |
|---|---|
| Entrez ID | 27164 |
| Gene full name | sal-like 3 (Drosophila) |
| Other gene symbols | ZNF796 |
| Links to Entrez Gene | Links to Entrez Gene |
2. Neighbors in the network
This gene isn't in Literature mining network.
3. Gene ontology annotation
GO ID | GO term | Evidence | Category |
|---|---|---|---|
| GO:0003676 | Nucleic acid binding | IEA | molecular_function |
| GO:0003677 | DNA binding | IEA | molecular_function |
| GO:0005634 | Nucleus | IEA | cellular_component |
| GO:0006351 | Transcription, DNA-templated | IEA | biological_process |
| GO:0006355 | Regulation of transcription, DNA-templated | IEA | biological_process |
| GO:0021891 | Olfactory bulb interneuron development | IEA | biological_process |
| GO:0035136 | Forelimb morphogenesis | IEA | biological_process |
| GO:0035137 | Hindlimb morphogenesis | IEA | biological_process |
| GO:0045879 | Negative regulation of smoothened signaling pathway | IEA | biological_process |
| GO:0046872 | Metal ion binding | IEA | molecular_function |
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4. Expression levels in datasets
- Meta-analysis result
| p-value up | p-value down | FDR up | FDR down |
|---|---|---|---|
| 0.5443874017 | 0.8944723225 | 0.9999902473 | 1.0000000000 |
- Individual experiment result
( "-" represent NA in the specific microarray platform )
( "-" represent NA in the specific microarray platform )
| Data source | Up or down | Log fold change |
|---|---|---|
| GSE11954 | Down | -0.0446454371 |
| GSE13712_SHEAR | Down | -0.0019999311 |
| GSE13712_STATIC | Down | -0.0041461024 |
| GSE19018 | Up | 0.0578925905 |
| GSE19899_A1 | Up | 0.0721992668 |
| GSE19899_A2 | Up | 0.1062440047 |
| PubMed_21979375_A1 | Up | 0.0107030843 |
| PubMed_21979375_A2 | Up | 0.2254752625 |
| GSE35957 | Up | 0.0512186404 |
| GSE36640 | Up | 0.0136673538 |
| GSE54402 | Up | 0.0445943413 |
| GSE9593 | Down | -0.0526569207 |
| GSE43922 | Up | 0.1165393610 |
| GSE24585 | Up | 0.0608290393 |
| GSE37065 | Down | -0.1727286595 |
| GSE28863_A1 | Down | -0.0721376103 |
| GSE28863_A2 | Down | -0.0513495041 |
| GSE28863_A3 | Up | 0.4330932241 |
| GSE28863_A4 | Up | 0.1459699364 |
| GSE48662 | Up | 0.0363783540 |
5. Regulation relationships with compounds/drugs/microRNAs
- Compounds
Not regulated by compounds
- Drugs
Not regulated by drugs
- MicroRNAs
- mirTarBase
MiRNA_name | mirBase ID | miRTarBase ID | Experiment | Support type | References (Pubmed ID) |
|---|---|---|---|---|---|
| hsa-miR-615-3p | MIMAT0003283 | MIRT040159 | CLASH | Functional MTI (Weak) | 23622248 |
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- mirRecord
No target information from mirRecord
6. Text-mining results about the gene
Gene occurances in abstracts of cellular senescence-associated articles: This gene isn't in text-mining gene-sentence result.
