HCSGD entry for TRMT2A
1. General information
| Official gene symbol | TRMT2A |
|---|---|
| Entrez ID | 27037 |
| Gene full name | tRNA methyltransferase 2 homolog A (S. cerevisiae) |
| Other gene symbols | HTF9C |
| Links to Entrez Gene | Links to Entrez Gene |
2. Neighbors in the network
This gene isn't in Literature mining network.
3. Gene ontology annotation
GO ID | GO term | Evidence | Category |
|---|---|---|---|
| GO:0000166 | Nucleotide binding | IEA | molecular_function |
| GO:0003676 | Nucleic acid binding | IEA | molecular_function |
| GO:0003723 | RNA binding | IEA | molecular_function |
| GO:0006396 | RNA processing | IEA | biological_process |
| GO:0008173 | RNA methyltransferase activity | IEA | molecular_function |
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4. Expression levels in datasets
- Meta-analysis result
| p-value up | p-value down | FDR up | FDR down |
|---|---|---|---|
| 0.0376610805 | 0.9512024505 | 0.4382304598 | 1.0000000000 |
- Individual experiment result
( "-" represent NA in the specific microarray platform )
( "-" represent NA in the specific microarray platform )
| Data source | Up or down | Log fold change |
|---|---|---|
| GSE11954 | Up | 0.2261094724 |
| GSE13712_SHEAR | Down | -0.2622978737 |
| GSE13712_STATIC | Down | -0.0998560475 |
| GSE19018 | Up | 0.0279645866 |
| GSE19899_A1 | Down | -0.0241010422 |
| GSE19899_A2 | Up | 0.6239129899 |
| PubMed_21979375_A1 | Up | 1.7541860163 |
| PubMed_21979375_A2 | Up | 1.2731817409 |
| GSE35957 | Up | 0.0367924206 |
| GSE36640 | Up | 0.1544729366 |
| GSE54402 | Up | 0.2995768919 |
| GSE9593 | Down | -0.1551589939 |
| GSE43922 | Up | 0.3106779104 |
| GSE24585 | Down | -0.1034142105 |
| GSE37065 | Down | -0.2063659460 |
| GSE28863_A1 | Up | 0.0411347212 |
| GSE28863_A2 | Down | -0.0204358497 |
| GSE28863_A3 | Up | 0.3326191261 |
| GSE28863_A4 | Up | 0.1185446039 |
| GSE48662 | Up | 0.4474073560 |
5. Regulation relationships with compounds/drugs/microRNAs
- Compounds
Not regulated by compounds
- Drugs
Not regulated by drugs
- MicroRNAs
- mirTarBase
MiRNA_name | mirBase ID | miRTarBase ID | Experiment | Support type | References (Pubmed ID) |
|---|---|---|---|---|---|
| hsa-miR-26b-5p | MIMAT0000083 | MIRT029799 | Microarray | Functional MTI (Weak) | 19088304 |
| hsa-miR-744-5p | MIMAT0004945 | MIRT037605 | CLASH | Functional MTI (Weak) | 23622248 |
| hsa-miR-193b-3p | MIMAT0002819 | MIRT041422 | CLASH | Functional MTI (Weak) | 23622248 |
| hsa-miR-125a-5p | MIMAT0000443 | MIRT045766 | CLASH | Functional MTI (Weak) | 23622248 |
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- mirRecord
No target information from mirRecord
6. Text-mining results about the gene
Gene occurances in abstracts of cellular senescence-associated articles: This gene isn't in text-mining gene-sentence result.
