HCSGD entry for TRIM50
1. General information
| Official gene symbol | TRIM50 |
|---|---|
| Entrez ID | 135892 |
| Gene full name | tripartite motif containing 50 |
| Other gene symbols | TRIM50A |
| Links to Entrez Gene | Links to Entrez Gene |
2. Neighbors in the network
This gene isn't in Literature mining network.
3. Gene ontology annotation
GO ID | GO term | Evidence | Category |
|---|---|---|---|
| GO:0005737 | Cytoplasm | IEA | cellular_component |
| GO:0008270 | Zinc ion binding | IEA | molecular_function |
| GO:0016874 | Ligase activity | IEA | molecular_function |
| GO:0043231 | Intracellular membrane-bounded organelle | IDA | cellular_component |
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4. Expression levels in datasets
- Meta-analysis result
| p-value up | p-value down | FDR up | FDR down |
|---|---|---|---|
| 0.4872054519 | 0.5312343642 | 0.9999902473 | 1.0000000000 |
- Individual experiment result
( "-" represent NA in the specific microarray platform )
( "-" represent NA in the specific microarray platform )
| Data source | Up or down | Log fold change |
|---|---|---|
| GSE11954 | Down | -0.0181624336 |
| GSE13712_SHEAR | Down | -0.0201043534 |
| GSE13712_STATIC | Down | -0.0751924979 |
| GSE19018 | Up | 0.1231187662 |
| GSE19899_A1 | Down | -0.0095684091 |
| GSE19899_A2 | Up | 0.1767562985 |
| PubMed_21979375_A1 | Down | -0.0839664145 |
| PubMed_21979375_A2 | Down | -0.0516488717 |
| GSE35957 | Up | 0.1700139336 |
| GSE36640 | Up | 0.1603565562 |
| GSE54402 | Down | -0.0030818958 |
| GSE9593 | Up | 0.0328309491 |
| GSE43922 | Up | 0.0386870539 |
| GSE24585 | Up | 0.4477117825 |
| GSE37065 | Up | 0.0407340647 |
| GSE28863_A1 | Down | -0.0816169863 |
| GSE28863_A2 | Down | -0.0758939462 |
| GSE28863_A3 | Up | 0.1807421178 |
| GSE28863_A4 | Down | -0.6718828253 |
| GSE48662 | Up | 0.1283361604 |
5. Regulation relationships with compounds/drugs/microRNAs
- Compounds
Not regulated by compounds
- Drugs
Not regulated by drugs
- MicroRNAs
- mirTarBase
MiRNA_name | mirBase ID | miRTarBase ID | Experiment | Support type | References (Pubmed ID) |
|---|---|---|---|---|---|
| hsa-miR-335-5p | MIMAT0000765 | MIRT018041 | Microarray | Functional MTI (Weak) | 18185580 |
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- mirRecord
No target information from mirRecord
6. Text-mining results about the gene
Gene occurances in abstracts of cellular senescence-associated articles: This gene isn't in text-mining gene-sentence result.
