HCSGD entry for NCAPD2
1. General information
| Official gene symbol | NCAPD2 |
|---|---|
| Entrez ID | 9918 |
| Gene full name | non-SMC condensin I complex, subunit D2 |
| Other gene symbols | CAP-D2 CNAP1 hCAP-D2 |
| Links to Entrez Gene | Links to Entrez Gene |
2. Neighbors in the network
This gene isn't in PPI subnetwork.
3. Gene ontology annotation
GO ID | GO term | Evidence | Category |
|---|---|---|---|
| GO:0000228 | Nuclear chromosome | IDA | cellular_component |
| GO:0000278 | Mitotic cell cycle | TAS | biological_process |
| GO:0000793 | Condensed chromosome | IDA IEA | cellular_component |
| GO:0000796 | Condensin complex | IDA | cellular_component |
| GO:0000797 | Condensin core heterodimer | NAS | cellular_component |
| GO:0005515 | Protein binding | IPI | molecular_function |
| GO:0005634 | Nucleus | IDA NAS | cellular_component |
| GO:0005730 | Nucleolus | IDA | cellular_component |
| GO:0005737 | Cytoplasm | IDA NAS | cellular_component |
| GO:0005829 | Cytosol | TAS | cellular_component |
| GO:0007076 | Mitotic chromosome condensation | IDA IEA NAS | biological_process |
| GO:0042393 | Histone binding | IDA NAS | molecular_function |
| GO:0045120 | Pronucleus | IEA | cellular_component |
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4. Expression levels in datasets
- Meta-analysis result
| p-value up | p-value down | FDR up | FDR down |
|---|---|---|---|
| 0.7706993389 | 0.0002432088 | 0.9999902473 | 0.0274742489 |
- Individual experiment result
( "-" represent NA in the specific microarray platform )
( "-" represent NA in the specific microarray platform )
| Data source | Up or down | Log fold change |
|---|---|---|
| GSE11954 | Down | -0.4738481811 |
| GSE13712_SHEAR | Down | -0.1912418923 |
| GSE13712_STATIC | Down | -0.8576875025 |
| GSE19018 | Up | 0.3667313940 |
| GSE19899_A1 | Down | -0.6745618995 |
| GSE19899_A2 | Down | -4.0618763384 |
| PubMed_21979375_A1 | Down | -2.2961389627 |
| PubMed_21979375_A2 | Down | -2.7511818521 |
| GSE35957 | Down | -1.6209695436 |
| GSE36640 | Down | -3.9261655900 |
| GSE54402 | Down | -0.7817507540 |
| GSE9593 | Down | -0.9570672832 |
| GSE43922 | Down | -1.4036014690 |
| GSE24585 | Up | 0.0481250179 |
| GSE37065 | Down | -0.2599937438 |
| GSE28863_A1 | Up | 0.5862244356 |
| GSE28863_A2 | Up | 1.2556364314 |
| GSE28863_A3 | Down | -0.7381170653 |
| GSE28863_A4 | Up | 0.2539685602 |
| GSE48662 | Down | -0.5316973569 |
5. Regulation relationships with compounds/drugs/microRNAs
- Compounds
Not regulated by compounds
- Drugs
Not regulated by drugs
- MicroRNAs
- mirTarBase
- mirTarBase
MiRNA_name | mirBase ID | miRTarBase ID | Experiment | Support type | References (Pubmed ID) |
|---|---|---|---|---|---|
| hsa-miR-193b-3p | MIMAT0002819 | MIRT016499 | Proteomics | Functional MTI (Weak) | 21512034 |
| hsa-miR-155-5p | MIMAT0000646 | MIRT020820 | Proteomics | Functional MTI (Weak) | 18668040 |
| hsa-miR-16-5p | MIMAT0000069 | MIRT031777 | Proteomics | Functional MTI (Weak) | 18668040 |
| hsa-miR-1303 | MIMAT0005891 | MIRT035874 | CLASH | Functional MTI (Weak) | 23622248 |
| hsa-miR-93-3p | MIMAT0004509 | MIRT038733 | CLASH | Functional MTI (Weak) | 23622248 |
| hsa-miR-615-3p | MIMAT0003283 | MIRT039773 | CLASH | Functional MTI (Weak) | 23622248 |
| hsa-miR-92b-3p | MIMAT0003218 | MIRT040571 | CLASH | Functional MTI (Weak) | 23622248 |
| hsa-miR-484 | MIMAT0002174 | MIRT042024 | CLASH | Functional MTI (Weak) | 23622248 |
| hsa-miR-331-3p | MIMAT0000760 | MIRT043407 | CLASH | Functional MTI (Weak) | 23622248 |
| hsa-miR-186-5p | MIMAT0000456 | MIRT045112 | CLASH | Functional MTI (Weak) | 23622248 |
| hsa-miR-222-3p | MIMAT0000279 | MIRT046748 | CLASH | Functional MTI (Weak) | 23622248 |
| hsa-let-7b-5p | MIMAT0000063 | MIRT051923 | CLASH | Functional MTI (Weak) | 23622248 |
| hsa-miR-3620-3p | MIMAT0018001 | MIRT052865 | CLASH | Functional MTI (Weak) | 23622248 |
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- mirRecord
No target information from mirRecord
- mirRecord
6. Text-mining results about the gene
Gene occurances in abstracts of cellular senescence-associated articles: This gene isn't in text-mining gene-sentence result.
