HCSGD entry for FAM20B
1. General information
| Official gene symbol | FAM20B |
|---|---|
| Entrez ID | 9917 |
| Gene full name | family with sequence similarity 20, member B |
| Other gene symbols | gxk1 |
| Links to Entrez Gene | Links to Entrez Gene |
2. Neighbors in the network
This gene isn't in PPI subnetwork.
3. Gene ontology annotation
GO ID | GO term | Evidence | Category |
|---|---|---|---|
| GO:0000139 | Golgi membrane | IEA | cellular_component |
| GO:0005524 | ATP binding | IEA | molecular_function |
| GO:0005794 | Golgi apparatus | IDA | cellular_component |
| GO:0016021 | Integral component of membrane | IEA | cellular_component |
| GO:0016301 | Kinase activity | IEA | molecular_function |
| GO:0016773 | Phosphotransferase activity, alcohol group as acceptor | IDA | molecular_function |
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4. Expression levels in datasets
- Meta-analysis result
| p-value up | p-value down | FDR up | FDR down |
|---|---|---|---|
| 0.8144692413 | 0.1232970328 | 0.9999902473 | 0.6749406861 |
- Individual experiment result
( "-" represent NA in the specific microarray platform )
( "-" represent NA in the specific microarray platform )
| Data source | Up or down | Log fold change |
|---|---|---|
| GSE11954 | Down | -0.1020123968 |
| GSE13712_SHEAR | Down | -0.1778225332 |
| GSE13712_STATIC | Down | -0.0037995189 |
| GSE19018 | Up | 0.2708123985 |
| GSE19899_A1 | Down | -0.2998175607 |
| GSE19899_A2 | Down | -0.3007712107 |
| PubMed_21979375_A1 | Down | -0.1995968949 |
| PubMed_21979375_A2 | Down | -0.1587954757 |
| GSE35957 | Up | 0.5327866470 |
| GSE36640 | Up | 0.2342118476 |
| GSE54402 | Down | -0.3106678310 |
| GSE9593 | Up | 0.3990882204 |
| GSE43922 | Down | -0.0001120350 |
| GSE24585 | Up | 0.0129077100 |
| GSE37065 | Down | -0.0160862355 |
| GSE28863_A1 | Down | -0.2720433347 |
| GSE28863_A2 | Up | 0.0071521148 |
| GSE28863_A3 | Down | -0.9691601511 |
| GSE28863_A4 | Down | -0.0563541311 |
| GSE48662 | Up | 0.1651325968 |
5. Regulation relationships with compounds/drugs/microRNAs
- Compounds
Not regulated by compounds
- Drugs
Not regulated by drugs
- MicroRNAs
- mirTarBase
- mirTarBase
MiRNA_name | mirBase ID | miRTarBase ID | Experiment | Support type | References (Pubmed ID) |
|---|---|---|---|---|---|
| hsa-miR-193b-3p | MIMAT0002819 | MIRT016430 | Microarray | Functional MTI (Weak) | 20304954 |
| hsa-miR-215-5p | MIMAT0000272 | MIRT024806 | Microarray | Functional MTI (Weak) | 19074876 |
| hsa-miR-192-5p | MIMAT0000222 | MIRT026506 | Microarray | Functional MTI (Weak) | 19074876 |
| hsa-miR-26b-5p | MIMAT0000083 | MIRT029368 | Microarray | Functional MTI (Weak) | 19088304 |
| hsa-miR-21-5p | MIMAT0000076 | MIRT030835 | Microarray | Functional MTI (Weak) | 18591254 |
| hsa-miR-26a-5p | MIMAT0000082 | MIRT050059 | CLASH | Functional MTI (Weak) | 23622248 |
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- mirRecord
No target information from mirRecord
- mirRecord
6. Text-mining results about the gene
Gene occurances in abstracts of cellular senescence-associated articles: This gene isn't in text-mining gene-sentence result.
