HCSGD entry for ZBED4
1. General information
| Official gene symbol | ZBED4 |
|---|---|
| Entrez ID | 9889 |
| Gene full name | zinc finger, BED-type containing 4 |
| Other gene symbols | |
| Links to Entrez Gene | Links to Entrez Gene |
2. Neighbors in the network
This gene isn't in PPI subnetwork.
3. Gene ontology annotation
GO ID | GO term | Evidence | Category |
|---|---|---|---|
| GO:0003677 | DNA binding | IEA | molecular_function |
| GO:0005634 | Nucleus | IDA | cellular_component |
| GO:0005730 | Nucleolus | IDA | cellular_component |
| GO:0005737 | Cytoplasm | IDA | cellular_component |
| GO:0046872 | Metal ion binding | IEA | molecular_function |
| GO:0046983 | Protein dimerization activity | IEA | molecular_function |
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4. Expression levels in datasets
- Meta-analysis result
| p-value up | p-value down | FDR up | FDR down |
|---|---|---|---|
| 0.1215029178 | 0.5937763535 | 0.7128265479 | 1.0000000000 |
- Individual experiment result
( "-" represent NA in the specific microarray platform )
( "-" represent NA in the specific microarray platform )
| Data source | Up or down | Log fold change |
|---|---|---|
| GSE11954 | Up | 0.0161421192 |
| GSE13712_SHEAR | Up | 0.0843193729 |
| GSE13712_STATIC | Up | 0.2283480717 |
| GSE19018 | Down | -0.0714582096 |
| GSE19899_A1 | Up | 0.1781788796 |
| GSE19899_A2 | Up | 0.3594137796 |
| PubMed_21979375_A1 | Up | 0.4189253654 |
| PubMed_21979375_A2 | Up | 0.8577678075 |
| GSE35957 | Down | -0.2533267524 |
| GSE36640 | Down | -0.4933012101 |
| GSE54402 | Up | 0.5720095476 |
| GSE9593 | Down | -0.1120098106 |
| GSE43922 | Up | 0.5997934181 |
| GSE24585 | Down | -0.3403059749 |
| GSE37065 | Down | -0.0580701292 |
| GSE28863_A1 | Up | 0.1851911110 |
| GSE28863_A2 | Up | 0.3976135869 |
| GSE28863_A3 | Down | -0.2358335309 |
| GSE28863_A4 | Down | -0.0988826235 |
| GSE48662 | Down | -0.3266168750 |
5. Regulation relationships with compounds/drugs/microRNAs
- Compounds
Not regulated by compounds
- Drugs
Not regulated by drugs
- MicroRNAs
- mirTarBase
- mirTarBase
MiRNA_name | mirBase ID | miRTarBase ID | Experiment | Support type | References (Pubmed ID) |
|---|---|---|---|---|---|
| hsa-miR-484 | MIMAT0002174 | MIRT016619 | Sequencing | Functional MTI (Weak) | 20371350 |
| hsa-miR-98-5p | MIMAT0000096 | MIRT027812 | Microarray | Functional MTI (Weak) | 19088304 |
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- mirRecord
No target information from mirRecord
- mirRecord
6. Text-mining results about the gene
Gene occurances in abstracts of cellular senescence-associated articles: This gene isn't in text-mining gene-sentence result.
