HCSGD entry for TRANK1
1. General information
| Official gene symbol | TRANK1 |
|---|---|
| Entrez ID | 9881 |
| Gene full name | tetratricopeptide repeat and ankyrin repeat containing 1 |
| Other gene symbols | LBA1 |
| Links to Entrez Gene | Links to Entrez Gene |
2. Neighbors in the network
This gene isn't in PPI subnetwork.
3. Gene ontology annotation
GO ID | GO term | Evidence | Category |
|---|---|---|---|
| GO:0005524 | ATP binding | IEA | molecular_function |
| GO:0016787 | Hydrolase activity | IEA | molecular_function |
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4. Expression levels in datasets
- Meta-analysis result
| p-value up | p-value down | FDR up | FDR down |
|---|---|---|---|
| 0.1285591049 | 0.0416209794 | 0.7283263452 | 0.3838492642 |
- Individual experiment result
( "-" represent NA in the specific microarray platform )
( "-" represent NA in the specific microarray platform )
| Data source | Up or down | Log fold change |
|---|---|---|
| GSE11954 | Down | -0.2129717364 |
| GSE13712_SHEAR | Up | 0.1441966746 |
| GSE13712_STATIC | Up | 0.5854825566 |
| GSE19018 | Down | -0.1294234806 |
| GSE19899_A1 | Down | -0.2074034397 |
| GSE19899_A2 | Down | -0.6708317558 |
| PubMed_21979375_A1 | Down | -0.9007142760 |
| PubMed_21979375_A2 | Down | -0.2316652639 |
| GSE35957 | Down | -0.0216903931 |
| GSE36640 | Down | -0.4460292141 |
| GSE54402 | Down | -1.0790515735 |
| GSE9593 | Down | -0.0981168131 |
| GSE43922 | Down | -0.7662315783 |
| GSE24585 | Up | 0.8846349793 |
| GSE37065 | Up | 0.7490384812 |
| GSE28863_A1 | Up | 1.0929453156 |
| GSE28863_A2 | Up | 0.8999487264 |
| GSE28863_A3 | Down | -0.0039530610 |
| GSE28863_A4 | Down | -0.1823575364 |
| GSE48662 | Up | 0.2029669522 |
5. Regulation relationships with compounds/drugs/microRNAs
- Compounds
Not regulated by compounds
- Drugs
Not regulated by drugs
- MicroRNAs
- mirTarBase
- mirTarBase
MiRNA_name | mirBase ID | miRTarBase ID | Experiment | Support type | References (Pubmed ID) |
|---|---|---|---|---|---|
| hsa-miR-335-5p | MIMAT0000765 | MIRT018157 | Microarray | Functional MTI (Weak) | 18185580 |
| hsa-miR-26b-5p | MIMAT0000083 | MIRT029736 | Microarray | Functional MTI (Weak) | 19088304 |
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- mirRecord
No target information from mirRecord
- mirRecord
6. Text-mining results about the gene
Gene occurances in abstracts of cellular senescence-associated articles: This gene isn't in text-mining gene-sentence result.
