HCSGD entry for MATR3
1. General information
| Official gene symbol | MATR3 |
|---|---|
| Entrez ID | 9782 |
| Gene full name | matrin 3 |
| Other gene symbols | MPD2 VCPDM |
| Links to Entrez Gene | Links to Entrez Gene |
2. Neighbors in the network
This gene isn't in PPI subnetwork.
3. Gene ontology annotation
GO ID | GO term | Evidence | Category |
|---|---|---|---|
| GO:0000166 | Nucleotide binding | IEA | molecular_function |
| GO:0003676 | Nucleic acid binding | IEA | molecular_function |
| GO:0003723 | RNA binding | IEA | molecular_function |
| GO:0005198 | Structural molecule activity | TAS | molecular_function |
| GO:0005515 | Protein binding | IPI | molecular_function |
| GO:0005634 | Nucleus | IDA IEA | cellular_component |
| GO:0005637 | Nuclear inner membrane | TAS | cellular_component |
| GO:0005730 | Nucleolus | IDA | cellular_component |
| GO:0008270 | Zinc ion binding | IEA | molecular_function |
| GO:0016363 | Nuclear matrix | IEA | cellular_component |
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4. Expression levels in datasets
- Meta-analysis result
| p-value up | p-value down | FDR up | FDR down |
|---|---|---|---|
| 0.0634399339 | 0.4040875233 | 0.5431573147 | 1.0000000000 |
- Individual experiment result
( "-" represent NA in the specific microarray platform )
( "-" represent NA in the specific microarray platform )
| Data source | Up or down | Log fold change |
|---|---|---|
| GSE11954 | Up | 0.0951921256 |
| GSE13712_SHEAR | Up | 0.5493689061 |
| GSE13712_STATIC | Up | 0.4639711891 |
| GSE19018 | Down | -0.5281072602 |
| GSE19899_A1 | Up | 0.2604014759 |
| GSE19899_A2 | Up | 0.8920748791 |
| PubMed_21979375_A1 | Up | 0.5017800594 |
| PubMed_21979375_A2 | Up | 0.9213037469 |
| GSE35957 | Up | 0.0187299914 |
| GSE36640 | Up | 0.1044877493 |
| GSE54402 | Up | 0.1081464948 |
| GSE9593 | Down | -0.3383957121 |
| GSE43922 | - | - |
| GSE24585 | - | - |
| GSE37065 | - | - |
| GSE28863_A1 | Up | 0.2579666895 |
| GSE28863_A2 | Down | -0.2214470267 |
| GSE28863_A3 | Down | -0.2676957408 |
| GSE28863_A4 | Up | 0.0789254329 |
| GSE48662 | Down | -0.7042690676 |
5. Regulation relationships with compounds/drugs/microRNAs
- Compounds
Not regulated by compounds
- Drugs
Not regulated by drugs
- MicroRNAs
- mirTarBase
- mirTarBase
MiRNA_name | mirBase ID | miRTarBase ID | Experiment | Support type | References (Pubmed ID) |
|---|---|---|---|---|---|
| hsa-miR-155-5p | MIMAT0000646 | MIRT001804 | Luciferase reporter assay//Reporter assay;Other | Functional MTI | 17881434 |
| hsa-miR-200b-3p | MIMAT0000318 | MIRT005035 | Luciferase reporter assay//Microarray//qRT-PCR | Functional MTI | 19849700 |
| hsa-miR-1 | MIMAT0000416 | MIRT023619 | Proteomics | Functional MTI (Weak) | 18668040 |
| hsa-miR-7-5p | MIMAT0000252 | MIRT025656 | Microarray | Functional MTI (Weak) | 19073608 |
| hsa-miR-26b-5p | MIMAT0000083 | MIRT029123 | Microarray | Functional MTI (Weak) | 19088304 |
| hsa-miR-24-3p | MIMAT0000080 | MIRT030450 | Microarray | Functional MTI (Weak) | 19748357 |
| hsa-miR-744-5p | MIMAT0004945 | MIRT037686 | CLASH | Functional MTI (Weak) | 23622248 |
| hsa-miR-615-3p | MIMAT0003283 | MIRT040232 | CLASH | Functional MTI (Weak) | 23622248 |
| hsa-miR-186-5p | MIMAT0000456 | MIRT044932 | CLASH | Functional MTI (Weak) | 23622248 |
| hsa-miR-185-5p | MIMAT0000455 | MIRT045312 | CLASH | Functional MTI (Weak) | 23622248 |
| hsa-miR-149-5p | MIMAT0000450 | MIRT045433 | CLASH | Functional MTI (Weak) | 23622248 |
| hsa-miR-125b-5p | MIMAT0000423 | MIRT046009 | CLASH | Functional MTI (Weak) | 23622248 |
| hsa-miR-30b-5p | MIMAT0000420 | MIRT046131 | CLASH | Functional MTI (Weak) | 23622248 |
| hsa-miR-30c-5p | MIMAT0000244 | MIRT047914 | CLASH | Functional MTI (Weak) | 23622248 |
| hsa-miR-18a-5p | MIMAT0000072 | MIRT050688 | CLASH | Functional MTI (Weak) | 23622248 |
| hsa-let-7e-5p | MIMAT0000066 | MIRT051595 | CLASH | Functional MTI (Weak) | 23622248 |
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- mirRecord
- mirRecord
MicroRNA name | mirBase ID | Target site number | MiRNA mature ID | Test method inter | MiRNA regulation site | Reporter target site | Pubmed ID |
|---|---|---|---|---|---|---|---|
| hsa-miR-155-5p | MIMAT0000646 | NA | hsa-miR-155 | 17881434 |
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6. Text-mining results about the gene
Gene occurances in abstracts of cellular senescence-associated articles: This gene isn't in text-mining gene-sentence result.
