HCSGD entry for SNPH
1. General information
| Official gene symbol | SNPH |
|---|---|
| Entrez ID | 9751 |
| Gene full name | syntaphilin |
| Other gene symbols | bA314N13.5 |
| Links to Entrez Gene | Links to Entrez Gene |
2. Neighbors in the network
This gene isn't in PPI subnetwork.
3. Gene ontology annotation
GO ID | GO term | Evidence | Category |
|---|---|---|---|
| GO:0005881 | Cytoplasmic microtubule | IDA | cellular_component |
| GO:0007269 | Neurotransmitter secretion | NAS | biological_process |
| GO:0007420 | Brain development | IEA | biological_process |
| GO:0016021 | Integral component of membrane | IEA | cellular_component |
| GO:0016081 | Synaptic vesicle docking involved in exocytosis | NAS | biological_process |
| GO:0017075 | Syntaxin-1 binding | NAS | molecular_function |
| GO:0030054 | Cell junction | IEA | cellular_component |
| GO:0030182 | Neuron differentiation | IEA | biological_process |
| GO:0031966 | Mitochondrial membrane | IEA | cellular_component |
| GO:0042734 | Presynaptic membrane | IEA | cellular_component |
| GO:0043005 | Neuron projection | IEA | cellular_component |
| GO:0043025 | Neuronal cell body | IEA | cellular_component |
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4. Expression levels in datasets
- Meta-analysis result
| p-value up | p-value down | FDR up | FDR down |
|---|---|---|---|
| 0.0331531971 | 0.9670364386 | 0.4190870875 | 1.0000000000 |
- Individual experiment result
( "-" represent NA in the specific microarray platform )
( "-" represent NA in the specific microarray platform )
| Data source | Up or down | Log fold change |
|---|---|---|
| GSE11954 | Up | 0.2316334813 |
| GSE13712_SHEAR | Down | -0.4251282132 |
| GSE13712_STATIC | Down | -0.0640267040 |
| GSE19018 | Down | -0.0395817197 |
| GSE19899_A1 | Up | 0.3029328123 |
| GSE19899_A2 | Up | 1.0866201370 |
| PubMed_21979375_A1 | Down | -0.2883293120 |
| PubMed_21979375_A2 | Up | 0.7587210489 |
| GSE35957 | Down | -0.1534776854 |
| GSE36640 | Up | 1.0090572884 |
| GSE54402 | Up | 0.1322801689 |
| GSE9593 | Up | 0.2422759325 |
| GSE43922 | - | - |
| GSE24585 | - | - |
| GSE37065 | - | - |
| GSE28863_A1 | - | - |
| GSE28863_A2 | - | - |
| GSE28863_A3 | - | - |
| GSE28863_A4 | - | - |
| GSE48662 | Up | 0.6986081740 |
5. Regulation relationships with compounds/drugs/microRNAs
- Compounds
Not regulated by compounds
- Drugs
Not regulated by drugs
- MicroRNAs
- mirTarBase
- mirTarBase
MiRNA_name | mirBase ID | miRTarBase ID | Experiment | Support type | References (Pubmed ID) |
|---|---|---|---|---|---|
| hsa-miR-375 | MIMAT0000728 | MIRT019920 | Microarray | Functional MTI (Weak) | 20215506 |
| hsa-miR-25-3p | MIMAT0000081 | MIRT050355 | CLASH | Functional MTI (Weak) | 23622248 |
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- mirRecord
No target information from mirRecord
- mirRecord
6. Text-mining results about the gene
Gene occurances in abstracts of cellular senescence-associated articles: This gene isn't in text-mining gene-sentence result.
