HCSGD entry for USP6NL
1. General information
| Official gene symbol | USP6NL |
|---|---|
| Entrez ID | 9712 |
| Gene full name | USP6 N-terminal like |
| Other gene symbols | RNTRE TRE2NL USP6NL-IT1 |
| Links to Entrez Gene | Links to Entrez Gene |
2. Neighbors in the network
This gene isn't in PPI subnetwork.
3. Gene ontology annotation
GO ID | GO term | Evidence | Category |
|---|---|---|---|
| GO:0005097 | Rab GTPase activator activity | IDA | molecular_function |
| GO:0005794 | Golgi apparatus | IEA | cellular_component |
| GO:0007030 | Golgi organization | IMP | biological_process |
| GO:0016023 | Cytoplasmic membrane-bounded vesicle | IEA | cellular_component |
| GO:0031410 | Cytoplasmic vesicle | IDA | cellular_component |
| GO:0032320 | Positive regulation of Ras GTPase activity | IDA | biological_process |
| GO:0032851 | Positive regulation of Rab GTPase activity | IDA | biological_process |
| GO:0035526 | Retrograde transport, plasma membrane to Golgi | IMP | biological_process |
| GO:0043085 | Positive regulation of catalytic activity | IDA | biological_process |
| GO:0043547 | Positive regulation of GTPase activity | IDA | biological_process |
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4. Expression levels in datasets
- Meta-analysis result
| p-value up | p-value down | FDR up | FDR down |
|---|---|---|---|
| 0.9920140876 | 0.0489977736 | 0.9999902473 | 0.4139020513 |
- Individual experiment result
( "-" represent NA in the specific microarray platform )
( "-" represent NA in the specific microarray platform )
| Data source | Up or down | Log fold change |
|---|---|---|
| GSE11954 | Down | -0.0051082564 |
| GSE13712_SHEAR | Down | -0.1993523342 |
| GSE13712_STATIC | Down | -0.3720676719 |
| GSE19018 | Down | -0.1270949317 |
| GSE19899_A1 | Down | -0.2637949024 |
| GSE19899_A2 | Down | -0.4486734600 |
| PubMed_21979375_A1 | Down | -0.1638376715 |
| PubMed_21979375_A2 | Down | -0.4248124097 |
| GSE35957 | Down | -0.1484755707 |
| GSE36640 | Down | -0.4750118487 |
| GSE54402 | Up | 0.0654153541 |
| GSE9593 | Down | -0.0938774129 |
| GSE43922 | Down | -0.3444484529 |
| GSE24585 | Up | 0.0199906370 |
| GSE37065 | Up | 0.1512808900 |
| GSE28863_A1 | - | - |
| GSE28863_A2 | - | - |
| GSE28863_A3 | - | - |
| GSE28863_A4 | - | - |
| GSE48662 | Down | -0.4906547982 |
5. Regulation relationships with compounds/drugs/microRNAs
- Compounds
Not regulated by compounds
- Drugs
Not regulated by drugs
- MicroRNAs
- mirTarBase
- mirTarBase
MiRNA_name | mirBase ID | miRTarBase ID | Experiment | Support type | References (Pubmed ID) |
|---|---|---|---|---|---|
| hsa-miR-590-3p | MIMAT0004801 | MIRT016196 | Sequencing | Functional MTI (Weak) | 20371350 |
| hsa-miR-92b-5p | MIMAT0004792 | MIRT037796 | CLASH | Functional MTI (Weak) | 23622248 |
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- mirRecord
No target information from mirRecord
- mirRecord
6. Text-mining results about the gene
Gene occurances in abstracts of cellular senescence-associated articles: This gene isn't in text-mining gene-sentence result.
