HCSGD entry for CLINT1
1. General information
| Official gene symbol | CLINT1 |
|---|---|
| Entrez ID | 9685 |
| Gene full name | clathrin interactor 1 |
| Other gene symbols | CLINT ENTH EPN4 EPNR |
| Links to Entrez Gene | Links to Entrez Gene |
2. Neighbors in the network
This gene isn't in PPI subnetwork.
3. Gene ontology annotation
GO ID | GO term | Evidence | Category |
|---|---|---|---|
| GO:0005515 | Protein binding | IPI | molecular_function |
| GO:0005794 | Golgi apparatus | IDA | cellular_component |
| GO:0005829 | Cytosol | TAS | cellular_component |
| GO:0006892 | Post-Golgi vesicle-mediated transport | TAS | biological_process |
| GO:0006897 | Endocytosis | IEA | biological_process |
| GO:0008289 | Lipid binding | IEA | molecular_function |
| GO:0016020 | Membrane | IEA | cellular_component |
| GO:0030136 | Clathrin-coated vesicle | IEA | cellular_component |
| GO:0030276 | Clathrin binding | IPI | molecular_function |
| GO:0048268 | Clathrin coat assembly | IEA | biological_process |
| GO:0048471 | Perinuclear region of cytoplasm | IEA | cellular_component |
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4. Expression levels in datasets
- Meta-analysis result
| p-value up | p-value down | FDR up | FDR down |
|---|---|---|---|
| 0.5147950002 | 0.7975571179 | 0.9999902473 | 1.0000000000 |
- Individual experiment result
( "-" represent NA in the specific microarray platform )
( "-" represent NA in the specific microarray platform )
| Data source | Up or down | Log fold change |
|---|---|---|
| GSE11954 | Up | 0.0173255989 |
| GSE13712_SHEAR | Up | 0.2903632594 |
| GSE13712_STATIC | Down | -0.0940009887 |
| GSE19018 | Up | 0.1155734973 |
| GSE19899_A1 | Down | -0.0185870572 |
| GSE19899_A2 | Up | 0.0646875844 |
| PubMed_21979375_A1 | Down | -0.1880294045 |
| PubMed_21979375_A2 | Up | 0.0411037710 |
| GSE35957 | Down | -0.1897010529 |
| GSE36640 | Up | 0.4327498184 |
| GSE54402 | Down | -0.0319769058 |
| GSE9593 | Up | 0.1284025920 |
| GSE43922 | Up | 0.0290384480 |
| GSE24585 | Up | 0.1157839542 |
| GSE37065 | Down | -0.0021914809 |
| GSE28863_A1 | Up | 0.2950456219 |
| GSE28863_A2 | Up | 0.1106323328 |
| GSE28863_A3 | Down | -0.3977168992 |
| GSE28863_A4 | Down | -0.1135161891 |
| GSE48662 | Up | 0.1102283494 |
5. Regulation relationships with compounds/drugs/microRNAs
- Compounds
Not regulated by compounds
- Drugs
Not regulated by drugs
- MicroRNAs
- mirTarBase
- mirTarBase
MiRNA_name | mirBase ID | miRTarBase ID | Experiment | Support type | References (Pubmed ID) |
|---|---|---|---|---|---|
| hsa-miR-145-5p | MIMAT0000437 | MIRT000678 | qRT-PCR//Luciferase reporter assay//Microarray//Reporter assay;Other | Functional MTI | 19915607 |
| hsa-miR-155-5p | MIMAT0000646 | MIRT020844 | Proteomics | Functional MTI (Weak) | 18668040 |
| hsa-miR-98-5p | MIMAT0000096 | MIRT027639 | Microarray | Functional MTI (Weak) | 19088304 |
| hsa-miR-26b-5p | MIMAT0000083 | MIRT029629 | Microarray | Functional MTI (Weak) | 19088304 |
| hsa-let-7b-5p | MIMAT0000063 | MIRT052154 | CLASH | Functional MTI (Weak) | 23622248 |
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- mirRecord
- mirRecord
MicroRNA name | mirBase ID | Target site number | MiRNA mature ID | Test method inter | MiRNA regulation site | Reporter target site | Pubmed ID |
|---|---|---|---|---|---|---|---|
| hsa-miR-145-5p | MIMAT0000437 | NA | hsa-miR-145 | 19915607 |
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6. Text-mining results about the gene
Gene occurances in abstracts of cellular senescence-associated articles: This gene isn't in text-mining gene-sentence result.
