HCSGD entry for SDC3
1. General information
| Official gene symbol | SDC3 |
|---|---|
| Entrez ID | 9672 |
| Gene full name | syndecan 3 |
| Other gene symbols | SDCN SYND3 |
| Links to Entrez Gene | Links to Entrez Gene |
2. Neighbors in the network
This gene isn't in PPI subnetwork.
3. Gene ontology annotation
GO ID | GO term | Evidence | Category |
|---|---|---|---|
| GO:0001523 | Retinoid metabolic process | TAS | biological_process |
| GO:0005796 | Golgi lumen | TAS | cellular_component |
| GO:0005886 | Plasma membrane | TAS | cellular_component |
| GO:0005975 | Carbohydrate metabolic process | TAS | biological_process |
| GO:0006024 | Glycosaminoglycan biosynthetic process | TAS | biological_process |
| GO:0006027 | Glycosaminoglycan catabolic process | TAS | biological_process |
| GO:0007603 | Phototransduction, visible light | TAS | biological_process |
| GO:0008092 | Cytoskeletal protein binding | IEA | molecular_function |
| GO:0016020 | Membrane | ISS | cellular_component |
| GO:0016021 | Integral component of membrane | IEA | cellular_component |
| GO:0030198 | Extracellular matrix organization | TAS | biological_process |
| GO:0030203 | Glycosaminoglycan metabolic process | TAS | biological_process |
| GO:0030204 | Chondroitin sulfate metabolic process | TAS | biological_process |
| GO:0043202 | Lysosomal lumen | TAS | cellular_component |
| GO:0044281 | Small molecule metabolic process | TAS | biological_process |
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4. Expression levels in datasets
- Meta-analysis result
| p-value up | p-value down | FDR up | FDR down |
|---|---|---|---|
| 0.3223182098 | 0.0139081988 | 0.9999902473 | 0.2324936829 |
- Individual experiment result
( "-" represent NA in the specific microarray platform )
( "-" represent NA in the specific microarray platform )
| Data source | Up or down | Log fold change |
|---|---|---|
| GSE11954 | Down | -0.3502260013 |
| GSE13712_SHEAR | Up | 0.5269225648 |
| GSE13712_STATIC | Up | 0.4382474306 |
| GSE19018 | Up | 0.1356952835 |
| GSE19899_A1 | Down | -1.3624943815 |
| GSE19899_A2 | Down | -0.7810130919 |
| PubMed_21979375_A1 | Down | -1.6869334153 |
| PubMed_21979375_A2 | Down | -0.7628557977 |
| GSE35957 | Down | -0.0633189231 |
| GSE36640 | Up | 0.3953537224 |
| GSE54402 | Down | -1.0162967174 |
| GSE9593 | Up | 0.0620163803 |
| GSE43922 | Down | -1.3143478519 |
| GSE24585 | Up | 0.0077951133 |
| GSE37065 | Down | -0.2636127712 |
| GSE28863_A1 | Up | 0.1364204282 |
| GSE28863_A2 | Up | 0.6482970636 |
| GSE28863_A3 | Up | 0.2329008995 |
| GSE28863_A4 | Down | -0.3237371083 |
| GSE48662 | Up | 0.8163411275 |
5. Regulation relationships with compounds/drugs/microRNAs
- Compounds
Not regulated by compounds
- Drugs
Not regulated by drugs
- MicroRNAs
- mirTarBase
- mirTarBase
MiRNA_name | mirBase ID | miRTarBase ID | Experiment | Support type | References (Pubmed ID) |
|---|---|---|---|---|---|
| hsa-miR-335-5p | MIMAT0000765 | MIRT018892 | Microarray | Functional MTI (Weak) | 18185580 |
| hsa-miR-26b-5p | MIMAT0000083 | MIRT030232 | Microarray | Functional MTI (Weak) | 19088304 |
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- mirRecord
No target information from mirRecord
- mirRecord
6. Text-mining results about the gene
Gene occurances in abstracts of cellular senescence-associated articles: This gene isn't in text-mining gene-sentence result.
