HCSGD entry for SH3PXD2A
1. General information
| Official gene symbol | SH3PXD2A |
|---|---|
| Entrez ID | 9644 |
| Gene full name | SH3 and PX domains 2A |
| Other gene symbols | FISH SH3MD1 TKS5 |
| Links to Entrez Gene | Links to Entrez Gene |
2. Neighbors in the network
This gene isn't in PPI subnetwork.
3. Gene ontology annotation
GO ID | GO term | Evidence | Category |
|---|---|---|---|
| GO:0002102 | Podosome | IDA | cellular_component |
| GO:0005515 | Protein binding | IPI | molecular_function |
| GO:0005737 | Cytoplasm | IEA | cellular_component |
| GO:0006801 | Superoxide metabolic process | IDA IMP | biological_process |
| GO:0007154 | Cell communication | IEA | biological_process |
| GO:0030054 | Cell junction | IEA | cellular_component |
| GO:0035091 | Phosphatidylinositol binding | IEA | molecular_function |
| GO:0042995 | Cell projection | IEA | cellular_component |
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4. Expression levels in datasets
- Meta-analysis result
| p-value up | p-value down | FDR up | FDR down |
|---|---|---|---|
| 0.0466245545 | 0.2983009346 | 0.4780696922 | 1.0000000000 |
- Individual experiment result
( "-" represent NA in the specific microarray platform )
( "-" represent NA in the specific microarray platform )
| Data source | Up or down | Log fold change |
|---|---|---|
| GSE11954 | Down | -0.3864251599 |
| GSE13712_SHEAR | Down | -0.0185412444 |
| GSE13712_STATIC | Up | 0.4036884228 |
| GSE19018 | Down | -0.3498466854 |
| GSE19899_A1 | Down | -0.0039046814 |
| GSE19899_A2 | Up | 0.1861418200 |
| PubMed_21979375_A1 | Down | -0.8781067313 |
| PubMed_21979375_A2 | Up | 0.0234958335 |
| GSE35957 | Up | 1.8133612578 |
| GSE36640 | Up | 1.3342419720 |
| GSE54402 | Up | 0.0099487382 |
| GSE9593 | Up | 0.0948686791 |
| GSE43922 | Up | 0.0851290029 |
| GSE24585 | Down | -0.3003739299 |
| GSE37065 | Down | -0.3250667845 |
| GSE28863_A1 | Up | 0.5775516836 |
| GSE28863_A2 | Up | 0.5380767890 |
| GSE28863_A3 | Down | -0.0783318307 |
| GSE28863_A4 | Down | -0.0361266807 |
| GSE48662 | Up | 0.2717645045 |
5. Regulation relationships with compounds/drugs/microRNAs
- Compounds
Not regulated by compounds
- Drugs
Not regulated by drugs
- MicroRNAs
- mirTarBase
- mirTarBase
MiRNA_name | mirBase ID | miRTarBase ID | Experiment | Support type | References (Pubmed ID) |
|---|---|---|---|---|---|
| hsa-miR-335-5p | MIMAT0000765 | MIRT019047 | Microarray | Functional MTI (Weak) | 18185580 |
| hsa-miR-130b-3p | MIMAT0000691 | MIRT020272 | Sequencing | Functional MTI (Weak) | 20371350 |
| hsa-miR-124-3p | MIMAT0000422 | MIRT023125 | Microarray | Functional MTI (Weak) | 18668037 |
| hsa-miR-93-5p | MIMAT0000093 | MIRT028101 | Sequencing | Functional MTI (Weak) | 20371350 |
| hsa-miR-33a-5p | MIMAT0000091 | MIRT028217 | Sequencing | Functional MTI (Weak) | 20371350 |
| hsa-miR-24-3p | MIMAT0000080 | MIRT035542 | Luciferase reporter assay | Functional MTI | 23071155 |
| hsa-miR-331-3p | MIMAT0000760 | MIRT043337 | CLASH | Functional MTI (Weak) | 23622248 |
| hsa-let-7b-5p | MIMAT0000063 | MIRT052098 | CLASH | Functional MTI (Weak) | 23622248 |
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- mirRecord
No target information from mirRecord
- mirRecord
6. Text-mining results about the gene
Gene occurances in abstracts of cellular senescence-associated articles: This gene isn't in text-mining gene-sentence result.
