HCSGD entry for SCAMP1
1. General information
| Official gene symbol | SCAMP1 |
|---|---|
| Entrez ID | 9522 |
| Gene full name | secretory carrier membrane protein 1 |
| Other gene symbols | SCAMP SCAMP37 |
| Links to Entrez Gene | Links to Entrez Gene |
2. Neighbors in the network
This gene isn't in PPI subnetwork.
3. Gene ontology annotation
GO ID | GO term | Evidence | Category |
|---|---|---|---|
| GO:0005515 | Protein binding | IPI | molecular_function |
| GO:0005794 | Golgi apparatus | IEA | cellular_component |
| GO:0005802 | Trans-Golgi network | IDA | cellular_component |
| GO:0006892 | Post-Golgi vesicle-mediated transport | TAS | biological_process |
| GO:0015031 | Protein transport | IDA IEA | biological_process |
| GO:0016021 | Integral component of membrane | IDA IEA | cellular_component |
| GO:0055038 | Recycling endosome membrane | IDA | cellular_component |
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4. Expression levels in datasets
- Meta-analysis result
| p-value up | p-value down | FDR up | FDR down |
|---|---|---|---|
| 0.1235046427 | 0.3260273508 | 0.7181266181 | 1.0000000000 |
- Individual experiment result
( "-" represent NA in the specific microarray platform )
( "-" represent NA in the specific microarray platform )
| Data source | Up or down | Log fold change |
|---|---|---|
| GSE11954 | Down | -0.0779591095 |
| GSE13712_SHEAR | Up | 0.2472257018 |
| GSE13712_STATIC | Up | 0.3541842777 |
| GSE19018 | Up | 0.7041790335 |
| GSE19899_A1 | Up | 0.0944489883 |
| GSE19899_A2 | Down | -0.1808100020 |
| PubMed_21979375_A1 | Down | -0.4773707037 |
| PubMed_21979375_A2 | Up | 0.1108773359 |
| GSE35957 | Up | 0.6408388767 |
| GSE36640 | Up | 0.5305436222 |
| GSE54402 | Down | -0.2594775917 |
| GSE9593 | Up | 0.6947247990 |
| GSE43922 | Down | -0.1024775637 |
| GSE24585 | Up | 0.1163446132 |
| GSE37065 | Up | 0.1799484419 |
| GSE28863_A1 | Down | -0.3288066011 |
| GSE28863_A2 | Up | 0.2628764999 |
| GSE28863_A3 | Down | -0.7146220257 |
| GSE28863_A4 | Down | -0.3755667859 |
| GSE48662 | Up | 0.0925062353 |
5. Regulation relationships with compounds/drugs/microRNAs
- Compounds
Not regulated by compounds
- Drugs
Not regulated by drugs
- MicroRNAs
- mirTarBase
- mirTarBase
MiRNA_name | mirBase ID | miRTarBase ID | Experiment | Support type | References (Pubmed ID) |
|---|---|---|---|---|---|
| hsa-miR-155-5p | MIMAT0000646 | MIRT001504 | pSILAC//Proteomics;Other | Functional MTI (Weak) | 18668040 |
| hsa-miR-335-5p | MIMAT0000765 | MIRT018181 | Microarray | Functional MTI (Weak) | 18185580 |
| hsa-let-7b-5p | MIMAT0000063 | MIRT032318 | Proteomics | Functional MTI (Weak) | 18668040 |
| hsa-miR-1226-3p | MIMAT0005577 | MIRT036427 | CLASH | Functional MTI (Weak) | 23622248 |
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- mirRecord
No target information from mirRecord
- mirRecord
6. Text-mining results about the gene
Gene occurances in abstracts of cellular senescence-associated articles: This gene isn't in text-mining gene-sentence result.
