HCSGD entry for OPN4
1. General information
| Official gene symbol | OPN4 |
|---|---|
| Entrez ID | 94233 |
| Gene full name | opsin 4 |
| Other gene symbols | MOP |
| Links to Entrez Gene | Links to Entrez Gene |
2. Neighbors in the network
This gene isn't in PPI subnetwork.
3. Gene ontology annotation
GO ID | GO term | Evidence | Category |
|---|---|---|---|
| GO:0004930 | G-protein coupled receptor activity | IEA | molecular_function |
| GO:0005502 | 11-cis retinal binding | IDA | molecular_function |
| GO:0005886 | Plasma membrane | TAS | cellular_component |
| GO:0007601 | Visual perception | IEA | biological_process |
| GO:0007602 | Phototransduction | IDA IEA | biological_process |
| GO:0008020 | G-protein coupled photoreceptor activity | IDA | molecular_function |
| GO:0009881 | Photoreceptor activity | IEA | molecular_function |
| GO:0016021 | Integral component of membrane | IEA TAS | cellular_component |
| GO:0016056 | Rhodopsin mediated signaling pathway | IEA | biological_process |
| GO:0018298 | Protein-chromophore linkage | IEA | biological_process |
| GO:0042752 | Regulation of circadian rhythm | ISS | biological_process |
| GO:0048511 | Rhythmic process | IEA | biological_process |
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4. Expression levels in datasets
- Meta-analysis result
| p-value up | p-value down | FDR up | FDR down |
|---|---|---|---|
| 0.3041843851 | 0.9064247217 | 0.9999902473 | 1.0000000000 |
- Individual experiment result
( "-" represent NA in the specific microarray platform )
( "-" represent NA in the specific microarray platform )
| Data source | Up or down | Log fold change |
|---|---|---|
| GSE11954 | Down | -0.2092600882 |
| GSE13712_SHEAR | Up | 0.1821590955 |
| GSE13712_STATIC | Up | 0.0577829338 |
| GSE19018 | Up | 0.0858413084 |
| GSE19899_A1 | Up | 0.1166649858 |
| GSE19899_A2 | Up | 0.3898644473 |
| PubMed_21979375_A1 | Down | -0.0793897234 |
| PubMed_21979375_A2 | Down | -0.1484455358 |
| GSE35957 | Up | 0.1728748276 |
| GSE36640 | Up | 0.0269603636 |
| GSE54402 | Up | 0.0472590387 |
| GSE9593 | Up | 0.2031539938 |
| GSE43922 | Up | 0.0455206943 |
| GSE24585 | Up | 0.0552364365 |
| GSE37065 | Down | -0.0806311250 |
| GSE28863_A1 | Down | -0.0591928002 |
| GSE28863_A2 | Up | 0.0725755603 |
| GSE28863_A3 | Up | 0.2592705877 |
| GSE28863_A4 | Up | 0.0829754112 |
| GSE48662 | Up | 0.4125285570 |
5. Regulation relationships with compounds/drugs/microRNAs
- Compounds
Not regulated by compounds
- Drugs
Not regulated by drugs
- MicroRNAs
- mirTarBase
No target information from mirTarBase
- mirTarBase
- mirRecord
No target information from mirRecord
- mirRecord
6. Text-mining results about the gene
Gene occurances in abstracts of cellular senescence-associated articles: This gene isn't in text-mining gene-sentence result.
