HCSGD entry for RP1L1
1. General information
| Official gene symbol | RP1L1 |
|---|---|
| Entrez ID | 94137 |
| Gene full name | retinitis pigmentosa 1-like 1 |
| Other gene symbols | DCDC4B |
| Links to Entrez Gene | Links to Entrez Gene |
2. Neighbors in the network
This gene isn't in PPI subnetwork.
3. Gene ontology annotation
GO ID | GO term | Evidence | Category |
|---|---|---|---|
| GO:0001750 | Photoreceptor outer segment | IEA ISS | cellular_component |
| GO:0005874 | Microtubule | IEA | cellular_component |
| GO:0005930 | Axoneme | ISS | cellular_component |
| GO:0007601 | Visual perception | IEA | biological_process |
| GO:0030030 | Cell projection organization | IEA | biological_process |
| GO:0032391 | Photoreceptor connecting cilium | IEA ISS | cellular_component |
| GO:0035556 | Intracellular signal transduction | IEA | biological_process |
| GO:0042461 | Photoreceptor cell development | IEA ISS | biological_process |
| GO:0045494 | Photoreceptor cell maintenance | IEA IMP ISS | biological_process |
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4. Expression levels in datasets
- Meta-analysis result
| p-value up | p-value down | FDR up | FDR down |
|---|---|---|---|
| 0.5916306941 | 0.7892271950 | 0.9999902473 | 1.0000000000 |
- Individual experiment result
( "-" represent NA in the specific microarray platform )
( "-" represent NA in the specific microarray platform )
| Data source | Up or down | Log fold change |
|---|---|---|
| GSE11954 | Up | 0.0634303808 |
| GSE13712_SHEAR | Up | 0.1400625170 |
| GSE13712_STATIC | Down | -0.1261087255 |
| GSE19018 | Down | -0.0321981214 |
| GSE19899_A1 | Down | -0.0621106443 |
| GSE19899_A2 | Down | -0.2141724006 |
| PubMed_21979375_A1 | Up | 0.3417720334 |
| PubMed_21979375_A2 | Up | 0.1017092014 |
| GSE35957 | Up | 0.0798166641 |
| GSE36640 | Up | 0.0110435567 |
| GSE54402 | Up | 0.0777463680 |
| GSE9593 | Down | -0.1285297132 |
| GSE43922 | Up | 0.1168777457 |
| GSE24585 | Up | 0.0549454695 |
| GSE37065 | Down | -0.1172389518 |
| GSE28863_A1 | Down | -0.0797005323 |
| GSE28863_A2 | Down | -0.0065013058 |
| GSE28863_A3 | Up | 0.3968423739 |
| GSE28863_A4 | Up | 0.1265515394 |
| GSE48662 | Down | -0.1268672687 |
5. Regulation relationships with compounds/drugs/microRNAs
- Compounds
Not regulated by compounds
- Drugs
Not regulated by drugs
- MicroRNAs
- mirTarBase
- mirTarBase
MiRNA_name | mirBase ID | miRTarBase ID | Experiment | Support type | References (Pubmed ID) |
|---|---|---|---|---|---|
| hsa-miR-335-5p | MIMAT0000765 | MIRT017889 | Microarray | Functional MTI (Weak) | 18185580 |
| hsa-miR-16-5p | MIMAT0000069 | MIRT051113 | CLASH | Functional MTI (Weak) | 23622248 |
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- mirRecord
No target information from mirRecord
- mirRecord
6. Text-mining results about the gene
Gene occurances in abstracts of cellular senescence-associated articles: This gene isn't in text-mining gene-sentence result.
