HCSGD entry for SNRNP40
1. General information
| Official gene symbol | SNRNP40 |
|---|---|
| Entrez ID | 9410 |
| Gene full name | small nuclear ribonucleoprotein 40kDa (U5) |
| Other gene symbols | 40K HPRP8BP PRP8BP PRPF8BP RP11-490K7.3 SPF38 WDR57 |
| Links to Entrez Gene | Links to Entrez Gene |
2. Neighbors in the network
This gene isn't in PPI subnetwork.
3. Gene ontology annotation
GO ID | GO term | Evidence | Category |
|---|---|---|---|
| GO:0000375 | RNA splicing, via transesterification reactions | TAS | biological_process |
| GO:0000398 | MRNA splicing, via spliceosome | IC TAS | biological_process |
| GO:0005515 | Protein binding | IPI | molecular_function |
| GO:0005634 | Nucleus | IDA | cellular_component |
| GO:0005654 | Nucleoplasm | TAS | cellular_component |
| GO:0005682 | U5 snRNP | TAS | cellular_component |
| GO:0005730 | Nucleolus | IDA | cellular_component |
| GO:0005732 | Small nucleolar ribonucleoprotein complex | NAS | cellular_component |
| GO:0005737 | Cytoplasm | IDA | cellular_component |
| GO:0006396 | RNA processing | TAS | biological_process |
| GO:0008380 | RNA splicing | TAS | biological_process |
| GO:0010467 | Gene expression | TAS | biological_process |
| GO:0071013 | Catalytic step 2 spliceosome | IDA | cellular_component |
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4. Expression levels in datasets
- Meta-analysis result
| p-value up | p-value down | FDR up | FDR down |
|---|---|---|---|
| 0.8158137951 | 0.0360818814 | 0.9999902473 | 0.3581466717 |
- Individual experiment result
( "-" represent NA in the specific microarray platform )
( "-" represent NA in the specific microarray platform )
| Data source | Up or down | Log fold change |
|---|---|---|
| GSE11954 | Up | 0.1918598926 |
| GSE13712_SHEAR | Up | 0.1503405034 |
| GSE13712_STATIC | Down | -0.3959876047 |
| GSE19018 | Down | -0.0909711637 |
| GSE19899_A1 | Down | -0.2824481754 |
| GSE19899_A2 | Down | -0.5060811415 |
| PubMed_21979375_A1 | Up | 0.2154702742 |
| PubMed_21979375_A2 | Down | -0.3103093133 |
| GSE35957 | Down | -1.1396086163 |
| GSE36640 | Down | -1.4200917691 |
| GSE54402 | Up | 0.5191424038 |
| GSE9593 | Down | -0.6002309416 |
| GSE43922 | Down | -0.0146118646 |
| GSE24585 | Down | -0.1894398991 |
| GSE37065 | Up | 0.0366363837 |
| GSE28863_A1 | Down | -0.1836713724 |
| GSE28863_A2 | Up | 0.2968743492 |
| GSE28863_A3 | Down | -0.2529150153 |
| GSE28863_A4 | Up | 0.0129583060 |
| GSE48662 | Down | -0.1412225678 |
5. Regulation relationships with compounds/drugs/microRNAs
- Compounds
Not regulated by compounds
- Drugs
Not regulated by drugs
- MicroRNAs
- mirTarBase
- mirTarBase
MiRNA_name | mirBase ID | miRTarBase ID | Experiment | Support type | References (Pubmed ID) |
|---|---|---|---|---|---|
| hsa-miR-186-5p | MIMAT0000456 | MIRT045102 | CLASH | Functional MTI (Weak) | 23622248 |
| hsa-miR-30c-5p | MIMAT0000244 | MIRT047943 | CLASH | Functional MTI (Weak) | 23622248 |
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- mirRecord
No target information from mirRecord
- mirRecord
6. Text-mining results about the gene
Gene occurances in abstracts of cellular senescence-associated articles: This gene isn't in text-mining gene-sentence result.
