HCSGD entry for RAB28
1. General information
| Official gene symbol | RAB28 |
|---|---|
| Entrez ID | 9364 |
| Gene full name | RAB28, member RAS oncogene family |
| Other gene symbols | |
| Links to Entrez Gene | Links to Entrez Gene |
2. Neighbors in the network
This gene isn't in PPI subnetwork.
3. Gene ontology annotation
GO ID | GO term | Evidence | Category |
|---|---|---|---|
| GO:0003924 | GTPase activity | TAS | molecular_function |
| GO:0005525 | GTP binding | IDA IEA | molecular_function |
| GO:0005737 | Cytoplasm | IEA | cellular_component |
| GO:0005886 | Plasma membrane | IEA | cellular_component |
| GO:0006184 | GTP catabolic process | TAS | biological_process |
| GO:0007264 | Small GTPase mediated signal transduction | IEA | biological_process |
| GO:0008152 | Metabolic process | TAS | biological_process |
| GO:0019003 | GDP binding | IDA | molecular_function |
| GO:0035253 | Ciliary rootlet | ISS | cellular_component |
| GO:0036064 | Ciliary basal body | ISS | cellular_component |
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4. Expression levels in datasets
- Meta-analysis result
| p-value up | p-value down | FDR up | FDR down |
|---|---|---|---|
| 0.9300707458 | 0.2448588389 | 0.9999902473 | 0.9529690226 |
- Individual experiment result
( "-" represent NA in the specific microarray platform )
( "-" represent NA in the specific microarray platform )
| Data source | Up or down | Log fold change |
|---|---|---|
| GSE11954 | Down | -0.0819698245 |
| GSE13712_SHEAR | Down | -0.2417709873 |
| GSE13712_STATIC | Down | -0.1346649578 |
| GSE19018 | Up | 0.1568880670 |
| GSE19899_A1 | Down | -0.1555004464 |
| GSE19899_A2 | Down | -0.1169193489 |
| PubMed_21979375_A1 | Up | 0.0162251838 |
| PubMed_21979375_A2 | Down | -0.4441805120 |
| GSE35957 | Up | 0.0131859067 |
| GSE36640 | Up | 0.0550442386 |
| GSE54402 | Up | 0.1214916924 |
| GSE9593 | Down | -0.1231787228 |
| GSE43922 | Down | -0.2552243683 |
| GSE24585 | Up | 0.1458248771 |
| GSE37065 | Up | 0.1396882976 |
| GSE28863_A1 | Up | 0.2152789440 |
| GSE28863_A2 | Down | -0.0884446519 |
| GSE28863_A3 | Down | -0.1328150650 |
| GSE28863_A4 | Down | -0.0506104696 |
| GSE48662 | Down | -0.2166705012 |
5. Regulation relationships with compounds/drugs/microRNAs
- Compounds
Not regulated by compounds
- Drugs
Not regulated by drugs
- MicroRNAs
- mirTarBase
- mirTarBase
MiRNA_name | mirBase ID | miRTarBase ID | Experiment | Support type | References (Pubmed ID) |
|---|---|---|---|---|---|
| hsa-miR-197-3p | MIMAT0000227 | MIRT004181 | Microarray | Functional MTI (Weak) | 16822819 |
| hsa-miR-375 | MIMAT0000728 | MIRT019946 | Microarray | Functional MTI (Weak) | 20215506 |
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- mirRecord
No target information from mirRecord
- mirRecord
6. Text-mining results about the gene
Gene occurances in abstracts of cellular senescence-associated articles: This gene isn't in text-mining gene-sentence result.
