HCSGD entry for YTHDC1
1. General information
| Official gene symbol | YTHDC1 |
|---|---|
| Entrez ID | 91746 |
| Gene full name | YTH domain containing 1 |
| Other gene symbols | YT521 YT521-B |
| Links to Entrez Gene | Links to Entrez Gene |
2. Neighbors in the network
This gene isn't in PPI subnetwork.
3. Gene ontology annotation
GO ID | GO term | Evidence | Category |
|---|---|---|---|
| GO:0003723 | RNA binding | IDA | molecular_function |
| GO:0005515 | Protein binding | IPI | molecular_function |
| GO:0005634 | Nucleus | IDA | cellular_component |
| GO:0006376 | MRNA splice site selection | IDA | biological_process |
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4. Expression levels in datasets
- Meta-analysis result
| p-value up | p-value down | FDR up | FDR down |
|---|---|---|---|
| 0.3940597660 | 0.7234863341 | 0.9999902473 | 1.0000000000 |
- Individual experiment result
( "-" represent NA in the specific microarray platform )
( "-" represent NA in the specific microarray platform )
| Data source | Up or down | Log fold change |
|---|---|---|
| GSE11954 | Up | 0.0238643160 |
| GSE13712_SHEAR | Up | 0.0889178423 |
| GSE13712_STATIC | Down | -0.1750938383 |
| GSE19018 | Down | -0.0683004784 |
| GSE19899_A1 | Down | -0.0559666670 |
| GSE19899_A2 | Up | 0.0258271116 |
| PubMed_21979375_A1 | Down | -0.0556479107 |
| PubMed_21979375_A2 | Up | 0.0372794000 |
| GSE35957 | Up | 0.1080412861 |
| GSE36640 | Down | -0.0369040467 |
| GSE54402 | Up | 0.0067338159 |
| GSE9593 | Down | -0.0620261987 |
| GSE43922 | Down | -0.0508268873 |
| GSE24585 | Up | 0.0993522192 |
| GSE37065 | Up | 0.0867683076 |
| GSE28863_A1 | Up | 0.6932144326 |
| GSE28863_A2 | Up | 0.6926940200 |
| GSE28863_A3 | Up | 0.3139907032 |
| GSE28863_A4 | Down | -0.1538808069 |
| GSE48662 | Down | -0.2985404120 |
5. Regulation relationships with compounds/drugs/microRNAs
- Compounds
Not regulated by compounds
- Drugs
Not regulated by drugs
- MicroRNAs
- mirTarBase
- mirTarBase
MiRNA_name | mirBase ID | miRTarBase ID | Experiment | Support type | References (Pubmed ID) |
|---|---|---|---|---|---|
| hsa-miR-1 | MIMAT0000416 | MIRT023492 | Proteomics | Functional MTI (Weak) | 18668040 |
| hsa-miR-103a-3p | MIMAT0000101 | MIRT027037 | Sequencing | Functional MTI (Weak) | 20371350 |
| hsa-miR-93-5p | MIMAT0000093 | MIRT027989 | Sequencing | Functional MTI (Weak) | 20371350 |
| hsa-miR-19b-3p | MIMAT0000074 | MIRT031105 | Sequencing | Functional MTI (Weak) | 20371350 |
| hsa-miR-16-5p | MIMAT0000069 | MIRT031379 | Sequencing | Functional MTI (Weak) | 20371350 |
| hsa-miR-20a-3p | MIMAT0004493 | MIRT038967 | CLASH | Functional MTI (Weak) | 23622248 |
| hsa-miR-100-5p | MIMAT0000098 | MIRT048400 | CLASH | Functional MTI (Weak) | 23622248 |
| hsa-let-7b-5p | MIMAT0000063 | MIRT052150 | CLASH | Functional MTI (Weak) | 23622248 |
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- mirRecord
No target information from mirRecord
- mirRecord
6. Text-mining results about the gene
Gene occurances in abstracts of cellular senescence-associated articles: This gene isn't in text-mining gene-sentence result.
