HCSGD entry for COL23A1
1. General information
| Official gene symbol | COL23A1 |
|---|---|
| Entrez ID | 91522 |
| Gene full name | collagen, type XXIII, alpha 1 |
| Other gene symbols | |
| Links to Entrez Gene | Links to Entrez Gene |
2. Neighbors in the network
This gene isn't in PPI subnetwork.
3. Gene ontology annotation
GO ID | GO term | Evidence | Category |
|---|---|---|---|
| GO:0005581 | Collagen | IEA | cellular_component |
| GO:0005788 | Endoplasmic reticulum lumen | TAS | cellular_component |
| GO:0005886 | Plasma membrane | TAS | cellular_component |
| GO:0016021 | Integral component of membrane | IEA | cellular_component |
| GO:0022617 | Extracellular matrix disassembly | TAS | biological_process |
| GO:0030198 | Extracellular matrix organization | TAS | biological_process |
| GO:0030574 | Collagen catabolic process | TAS | biological_process |
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4. Expression levels in datasets
- Meta-analysis result
| p-value up | p-value down | FDR up | FDR down |
|---|---|---|---|
| 0.6901841837 | 0.7021838418 | 0.9999902473 | 1.0000000000 |
- Individual experiment result
( "-" represent NA in the specific microarray platform )
( "-" represent NA in the specific microarray platform )
| Data source | Up or down | Log fold change |
|---|---|---|
| GSE11954 | Up | 0.1400222580 |
| GSE13712_SHEAR | Down | -0.4723076714 |
| GSE13712_STATIC | Down | -0.1014749718 |
| GSE19018 | Up | 0.0402249402 |
| GSE19899_A1 | Up | 0.0579969432 |
| GSE19899_A2 | Up | 0.0355417275 |
| PubMed_21979375_A1 | Down | -0.2765117117 |
| PubMed_21979375_A2 | Up | 0.0455363818 |
| GSE35957 | Up | 0.0972930148 |
| GSE36640 | Up | 0.1049353024 |
| GSE54402 | Down | -0.0291794697 |
| GSE9593 | Down | -0.0004547253 |
| GSE43922 | Down | -0.0012167814 |
| GSE24585 | Down | -0.0119378507 |
| GSE37065 | Up | 0.0109173796 |
| GSE28863_A1 | Down | -0.0822898332 |
| GSE28863_A2 | Up | 0.0493283819 |
| GSE28863_A3 | Up | 0.2706801773 |
| GSE28863_A4 | Up | 0.1068546390 |
| GSE48662 | Up | 0.0163431509 |
5. Regulation relationships with compounds/drugs/microRNAs
- Compounds
Not regulated by compounds
- Drugs
Not regulated by drugs
- MicroRNAs
- mirTarBase
No target information from mirTarBase
- mirTarBase
- mirRecord
No target information from mirRecord
- mirRecord
6. Text-mining results about the gene
Gene occurances in abstracts of cellular senescence-associated articles: This gene isn't in text-mining gene-sentence result.
