HCSGD entry for RRP9
1. General information
| Official gene symbol | RRP9 |
|---|---|
| Entrez ID | 9136 |
| Gene full name | ribosomal RNA processing 9, small subunit (SSU) processome component, homolog (yeast) |
| Other gene symbols | RNU3IP2 U3-55K |
| Links to Entrez Gene | Links to Entrez Gene |
2. Neighbors in the network
This gene isn't in PPI subnetwork.
3. Gene ontology annotation
GO ID | GO term | Evidence | Category |
|---|---|---|---|
| GO:0003723 | RNA binding | IEA | molecular_function |
| GO:0005634 | Nucleus | IDA | cellular_component |
| GO:0005730 | Nucleolus | IDA | cellular_component |
| GO:0005732 | Small nucleolar ribonucleoprotein complex | TAS | cellular_component |
| GO:0006364 | RRNA processing | IEA | biological_process |
| GO:0030532 | Small nuclear ribonucleoprotein complex | TAS | cellular_component |
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4. Expression levels in datasets
- Meta-analysis result
| p-value up | p-value down | FDR up | FDR down |
|---|---|---|---|
| 0.4211090574 | 0.2466856540 | 0.9999902473 | 0.9555830097 |
- Individual experiment result
( "-" represent NA in the specific microarray platform )
( "-" represent NA in the specific microarray platform )
| Data source | Up or down | Log fold change |
|---|---|---|
| GSE11954 | Up | 0.4120891933 |
| GSE13712_SHEAR | Up | 0.0125866233 |
| GSE13712_STATIC | Up | 0.4313911795 |
| GSE19018 | Down | -0.1220688312 |
| GSE19899_A1 | Down | -0.1434361012 |
| GSE19899_A2 | Up | 0.2438936842 |
| PubMed_21979375_A1 | Up | 0.7988585212 |
| PubMed_21979375_A2 | Up | 0.2554199924 |
| GSE35957 | Down | -0.6302448842 |
| GSE36640 | Down | -0.4452658138 |
| GSE54402 | Up | 0.4104692965 |
| GSE9593 | Down | -0.3705521691 |
| GSE43922 | Up | 0.1056804538 |
| GSE24585 | Down | -0.1242949996 |
| GSE37065 | Down | -0.1476121135 |
| GSE28863_A1 | Down | -0.2702898685 |
| GSE28863_A2 | Down | -0.2069402240 |
| GSE28863_A3 | Down | -0.2412718190 |
| GSE28863_A4 | Down | -0.0456730629 |
| GSE48662 | Down | -0.0139829972 |
5. Regulation relationships with compounds/drugs/microRNAs
- Compounds
Not regulated by compounds
- Drugs
Not regulated by drugs
- MicroRNAs
- mirTarBase
- mirTarBase
MiRNA_name | mirBase ID | miRTarBase ID | Experiment | Support type | References (Pubmed ID) |
|---|---|---|---|---|---|
| hsa-miR-16-5p | MIMAT0000069 | MIRT031955 | Proteomics | Functional MTI (Weak) | 18668040 |
| hsa-miR-92a-3p | MIMAT0000092 | MIRT049238 | CLASH | Functional MTI (Weak) | 23622248 |
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- mirRecord
No target information from mirRecord
- mirRecord
6. Text-mining results about the gene
Gene occurances in abstracts of cellular senescence-associated articles: This gene isn't in text-mining gene-sentence result.
