HCSGD entry for RQCD1
1. General information
| Official gene symbol | RQCD1 |
|---|---|
| Entrez ID | 9125 |
| Gene full name | RCD1 required for cell differentiation1 homolog (S. pombe) |
| Other gene symbols | CNOT9 CT129 RCD-1 RCD1 |
| Links to Entrez Gene | Links to Entrez Gene |
2. Neighbors in the network
This gene isn't in PPI subnetwork.
3. Gene ontology annotation
GO ID | GO term | Evidence | Category |
|---|---|---|---|
| GO:0000288 | Nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay | TAS | biological_process |
| GO:0000289 | Nuclear-transcribed mRNA poly(A) tail shortening | TAS | biological_process |
| GO:0000932 | Cytoplasmic mRNA processing body | ISS | cellular_component |
| GO:0005515 | Protein binding | IPI | molecular_function |
| GO:0005634 | Nucleus | IEA | cellular_component |
| GO:0005829 | Cytosol | TAS | cellular_component |
| GO:0006351 | Transcription, DNA-templated | IEA | biological_process |
| GO:0006355 | Regulation of transcription, DNA-templated | IEA | biological_process |
| GO:0006417 | Regulation of translation | IEA | biological_process |
| GO:0007548 | Sex differentiation | TAS | biological_process |
| GO:0010467 | Gene expression | TAS | biological_process |
| GO:0016070 | RNA metabolic process | TAS | biological_process |
| GO:0016071 | MRNA metabolic process | TAS | biological_process |
| GO:0019221 | Cytokine-mediated signaling pathway | IEA | biological_process |
| GO:0030014 | CCR4-NOT complex | IDA | cellular_component |
| GO:0031047 | Gene silencing by RNA | IEA | biological_process |
| GO:0033147 | Negative regulation of intracellular estrogen receptor signaling pathway | IMP | biological_process |
| GO:2000327 | Positive regulation of ligand-dependent nuclear receptor transcription coactivator activity | IDA | biological_process |
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4. Expression levels in datasets
- Meta-analysis result
| p-value up | p-value down | FDR up | FDR down |
|---|---|---|---|
| 0.9455719464 | 0.0464419057 | 0.9999902473 | 0.4042319444 |
- Individual experiment result
( "-" represent NA in the specific microarray platform )
( "-" represent NA in the specific microarray platform )
| Data source | Up or down | Log fold change |
|---|---|---|
| GSE11954 | Up | 0.3008602355 |
| GSE13712_SHEAR | Up | 0.0680771221 |
| GSE13712_STATIC | Up | 0.1020601362 |
| GSE19018 | Down | -0.3612037616 |
| GSE19899_A1 | Down | -0.2860865720 |
| GSE19899_A2 | Down | -0.1469886960 |
| PubMed_21979375_A1 | Up | 0.0962417674 |
| PubMed_21979375_A2 | Down | -0.5442192213 |
| GSE35957 | Down | -0.2603654164 |
| GSE36640 | Down | -1.1337396861 |
| GSE54402 | Up | 0.2915782164 |
| GSE9593 | Down | -0.1529588778 |
| GSE43922 | Down | -0.0528693778 |
| GSE24585 | Down | -0.0319389895 |
| GSE37065 | Up | 0.1000469908 |
| GSE28863_A1 | Down | -0.3210075416 |
| GSE28863_A2 | Up | 0.1802482636 |
| GSE28863_A3 | Down | -0.6431524901 |
| GSE28863_A4 | Down | -0.2004335810 |
| GSE48662 | Down | -0.4621099214 |
5. Regulation relationships with compounds/drugs/microRNAs
- Compounds
Not regulated by compounds
- Drugs
Not regulated by drugs
- MicroRNAs
- mirTarBase
- mirTarBase
MiRNA_name | mirBase ID | miRTarBase ID | Experiment | Support type | References (Pubmed ID) |
|---|---|---|---|---|---|
| hsa-miR-30a-5p | MIMAT0000087 | MIRT005206 | pSILAC//Proteomics;Other | Functional MTI (Weak) | 18668040 |
| hsa-miR-155-5p | MIMAT0000646 | MIRT020732 | Proteomics | Functional MTI (Weak) | 18668040 |
| hsa-miR-181d-5p | MIMAT0002821 | MIRT041178 | CLASH | Functional MTI (Weak) | 23622248 |
| hsa-miR-181b-5p | MIMAT0000257 | MIRT047294 | CLASH | Functional MTI (Weak) | 23622248 |
| hsa-miR-23a-3p | MIMAT0000078 | MIRT050389 | CLASH | Functional MTI (Weak) | 23622248 |
| hsa-let-7a-5p | MIMAT0000062 | MIRT052427 | CLASH | Functional MTI (Weak) | 23622248 |
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- mirRecord
No target information from mirRecord
- mirRecord
6. Text-mining results about the gene
Gene occurances in abstracts of cellular senescence-associated articles: This gene isn't in text-mining gene-sentence result.
