HCSGD entry for TAF1B

1. General information

Official gene symbolTAF1B
Entrez ID9014
Gene full nameTATA box binding protein (TBP)-associated factor, RNA polymerase I, B, 63kDa
Other gene symbolsMGC:9349 RAF1B RAFI63 SL1 TAFI63
Links to Entrez GeneLinks to Entrez Gene

2. Neighbors in the network

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3. Gene ontology annotation

GO ID

GO term

Evidence

Category

GO:0001164RNA polymerase I CORE element sequence-specific DNA bindingIDAmolecular_function
GO:0001187RNA polymerase I CORE element sequence-specific DNA binding transcription factor recruiting transcription factor activityIDAmolecular_function
GO:0001189RNA polymerase I transcriptional preinitiation complex assembly at the promoter for the nuclear large rRNA transcriptIDAbiological_process
GO:0003700Sequence-specific DNA binding transcription factor activityNASmolecular_function
GO:0005515Protein bindingIPImolecular_function
GO:0005634NucleusNAScellular_component
GO:0005654NucleoplasmTAScellular_component
GO:0006351Transcription, DNA-templatedNASbiological_process
GO:0006356Regulation of transcription from RNA polymerase I promoterIDAbiological_process
GO:0006360Transcription from RNA polymerase I promoterTASbiological_process
GO:0006361Transcription initiation from RNA polymerase I promoterTASbiological_process
GO:0006362Transcription elongation from RNA polymerase I promoterTASbiological_process
GO:0006363Termination of RNA polymerase I transcriptionTASbiological_process
GO:0010467Gene expressionTASbiological_process
GO:0017025TBP-class protein bindingTASmolecular_function
GO:0046872Metal ion bindingIEAmolecular_function
GO:0070860RNA polymerase I core factor complexIDAcellular_component
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4. Expression levels in datasets

  • Meta-analysis result

p-value upp-value downFDR upFDR down
0.54096565480.04906251280.99999024730.4139020513

  • Individual experiment result
    ( "-" represent NA in the specific microarray platform )

Data sourceUp or downLog fold change
GSE11954Up0.1435201004
GSE13712_SHEARUp0.3726496411
GSE13712_STATICUp0.7601409627
GSE19018Down-0.2962664058
GSE19899_A1Down-0.3574752447
GSE19899_A2Down-0.1280948476
PubMed_21979375_A1Up0.8771262532
PubMed_21979375_A2Up0.1425814205
GSE35957Down-0.3554118107
GSE36640Down-0.4116639776
GSE54402Up0.1558745336
GSE9593Down-0.1855355281
GSE43922Down-0.0807207023
GSE24585Down-0.8033192675
GSE37065Down-0.1001919134
GSE28863_A1Up0.1737414019
GSE28863_A2Up0.2203734986
GSE28863_A3Down-0.4398350985
GSE28863_A4Down-0.2740934456
GSE48662Down-0.7000617168

5. Regulation relationships with compounds/drugs/microRNAs

  • Compounds

Not regulated by compounds

  • Drugs

Not regulated by drugs

  • MicroRNAs

    • mirTarBase
No target information from mirTarBase
    • mirRecord
No target information from mirRecord

6. Text-mining results about the gene

Gene occurances in abstracts of cellular senescence-associated articles: This gene isn't in text-mining gene-sentence result.