HCSGD entry for TRIM4
1. General information
| Official gene symbol | TRIM4 |
|---|---|
| Entrez ID | 89122 |
| Gene full name | tripartite motif containing 4 |
| Other gene symbols | RNF87 |
| Links to Entrez Gene | Links to Entrez Gene |
2. Neighbors in the network
This gene isn't in PPI subnetwork.
3. Gene ontology annotation
GO ID | GO term | Evidence | Category |
|---|---|---|---|
| GO:0005622 | Intracellular | IEA | cellular_component |
| GO:0005737 | Cytoplasm | IDA | cellular_component |
| GO:0005886 | Plasma membrane | IDA | cellular_component |
| GO:0008270 | Zinc ion binding | IEA | molecular_function |
| GO:0070206 | Protein trimerization | IDA | biological_process |
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4. Expression levels in datasets
- Meta-analysis result
| p-value up | p-value down | FDR up | FDR down |
|---|---|---|---|
| 0.1325325975 | 0.9425380001 | 0.7377187658 | 1.0000000000 |
- Individual experiment result
( "-" represent NA in the specific microarray platform )
( "-" represent NA in the specific microarray platform )
| Data source | Up or down | Log fold change |
|---|---|---|
| GSE11954 | Up | 0.0698342466 |
| GSE13712_SHEAR | Down | -0.1249275432 |
| GSE13712_STATIC | Up | 0.0497689661 |
| GSE19018 | Up | 0.0194033573 |
| GSE19899_A1 | Down | -0.0730850730 |
| GSE19899_A2 | Down | -0.0771118147 |
| PubMed_21979375_A1 | Up | 0.3800378574 |
| PubMed_21979375_A2 | Up | 0.0398381296 |
| GSE35957 | Up | 0.1183009939 |
| GSE36640 | Down | -0.1560341410 |
| GSE54402 | Up | 0.0402165755 |
| GSE9593 | Up | 0.0495777280 |
| GSE43922 | Up | 0.0981763370 |
| GSE24585 | Up | 0.2526874946 |
| GSE37065 | Up | 0.0237269661 |
| GSE28863_A1 | Up | 0.4966546817 |
| GSE28863_A2 | Up | 0.4337213610 |
| GSE28863_A3 | Up | 0.8146685464 |
| GSE28863_A4 | Down | -0.1586423683 |
| GSE48662 | Up | 0.0167050588 |
5. Regulation relationships with compounds/drugs/microRNAs
- Compounds
Not regulated by compounds
- Drugs
Not regulated by drugs
- MicroRNAs
- mirTarBase
- mirTarBase
MiRNA_name | mirBase ID | miRTarBase ID | Experiment | Support type | References (Pubmed ID) |
|---|---|---|---|---|---|
| hsa-miR-124-3p | MIMAT0000422 | MIRT022481 | Microarray | Functional MTI (Weak) | 18668037 |
| hsa-miR-96-5p | MIMAT0000095 | MIRT027884 | Sequencing | Functional MTI (Weak) | 20371350 |
| hsa-miR-16-5p | MIMAT0000069 | MIRT051223 | CLASH | Functional MTI (Weak) | 23622248 |
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- mirRecord
No target information from mirRecord
- mirRecord
6. Text-mining results about the gene
Gene occurances in abstracts of cellular senescence-associated articles: This gene isn't in text-mining gene-sentence result.
